Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2172g00027 ATGAGTAATGACCATGTTACTACTCTCTCTGGTATGCTTATAACATATTCCAAAGTTTTGAACTTTTCTTCCATGAGGATGTCCCTCTTTCTGTATGGTGTGACTGAATTTTATACTGATCAACTGCATCAGGGACCCAAATATCAAGAGATTGTTAATATTCGCTTAGGGGATGGAACTACTCGGCCTGGACAAGTTCTAGAAGTTGATGGTGAAAAAGCTGTTGTTCAGGTTTTTGAAGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTCACTGGTGAGGTATACAACCACAGAATCCCCTGCAGTTACTTGGACAATATAGAGATGATGAATTGGATGAGGAATCAAGTGAAGGGCCTAATAATACGAAGGTGCAGAGCCTTGTGCTCAATGAAGAGGAAATTGAAGAGCTTCTTAATTTGTCCCCTGGAAAGGTTATGCGATTAG 459 0.3965 MSNDHVTTLSGMLITYSKVLNFSSMRMSLFLYGVTEFYTDQLHQGPKYQEIVNIRLGDGTTRPGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVYNHRIPCSYLDNIEMMNWMRNQVKGLIIRRCRALCSMKRKLKSFLICPLERLCD 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2172g00027 152 Pfam ATP synthase alpha/beta family, beta-barrel domain 46 96 IPR004100 GO:0046034|GO:1902600
Gabi2172g00027 152 Gene3D - 38 108 - -
Gabi2172g00027 152 CDD ATP-synt_V_A-type_beta_N 45 97 - -
Gabi2172g00027 152 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 43 106 IPR022879 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2172g00027 Gabi-Chr2172 301946 304553 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2172g00027 44 111 Primary Pumps ATPases(2) AT4G38510 79.412 3.96e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2172g00027 K02147 - thj:104809618 108.997