Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2172g00009 ATGCACCACAACCTTGCAAGGTTGTGGATTGCTTTGCTTGCGGTCTCAACCACGCTAGTTCATTGCAAAACTGCCTCCCAAGATGTTTCAGCCCTTAATGTGATGTATACCAGCTTAAATTCTCCTTCACAACTGAGTGGCTGGAAATCAAGTGGAGGTGATCCTTGTGGCGACTCCTGGGAGAGAATAAAATGCTCAGGCTCATCTGTCACAGAAATAAATTTATCTGACCTGGGACTTACTGGATCAATGGGCTACCAGCTGTCTAGCTTAACATCAGTTACTTATTTTGATTTGAGCAACAACAACCTCAAGGGTGATATACCGTATCAACTTCCTCCAAATGCTCGTTACATAGATCTTTCTAAGAATGGCTTCACTGGAGGTGTACCTTATTCCATTTCTCAGATGAGTGACCTCAACCACCTAAATCTTGGACATAATCGGCTCAATAACCAGTTGGGAGACATGTTCAAGAAACTCACTAAACTCAAACAACTGGATTTATCATTCAATTCAATGTCAGGAAACCTGCCTCAGAGTCTTAAATCACTCTCAAGCCTCAAGAAGTTGCATCTGGAAAACAATCAATTCTCTGGTTCTGTAAATGTTCTTGCAAACCTTCCACTTGAAGAATTGAATGTTGAAAACAACAAATTTACTGGCTGGTTTCCTGAGGAGTTAAAGGATATAAATAGCTTGGAAACTGGAGGAAACTCTTGGTCAACTGGGCCAGCACCTCCTCCTCCTCCTGGTACACCCCCTATCAAGCATTCTGAGAAAAAGAAGAATGAAAAATCTGTTGTTAGTGGAGTAGCTATAGCAGGCATAGCTTTTGGTGTTCTGGCAATAATTATAATTGTCATTGCTCTTTCAAAAAAAAGGTCATCTTTAAGGTCATCTTTACCTTCTTCACATTTTATGGATGAAGAGAAGAATAGTCAGCGTAGATCTTTTACACCCCTTGCATCTCAGGAGTTATCCAAAGATTCGGGTGCTGATGTCAGCAAAGAATACAAAGGATTTAAGTCATTGGACTCCACTTCAATTGACATAAAGACTTTGCAAAAAGCTCCATCAATTGATGTTAGGTCATCAATCTCTGATTGTGTGCAATCTTTTAATGACATTGAGTTTGCAAATCGTCTAAATGCTAGAAGAAGCACATCAATCCGTTGTATTCCTTTTTCATTGGCAGAGTTGCAGACTGTTACTGCTAATTTTGCTTCAGGTCGACTTCTTGGCGAAGGATCCATTGGACGTGTTTATCGGGCCAAATATGCTGATGGAAAGGTATTGGCTGTGAAAAAAATCAACTCTTCACTTTTCCATGGTGGCCCTCCTGAGGAATTCTCTCAGATTGTTTCAAACATCTGGAAACTTCACCACCCAAATATTGCTGAGCTTGTTGGTTATTGTTCAGAACAGGAACACATGTTAATATATGATTATTTCAGAAACGGCTCTCTCCATGACTTTTTACACTTATCAGATGACTTCAGCAAACCACTCACTTGGAACACCAGAATCAGAATTGCATTGGGAACAGCTCGGGCTGTTGAGTACCTACATGAAATTTGTTCTCCATCTTTAGTTCACAAGAATATCAAGTCCTCCAATATTTTGCTTGACACGGATCTGAATCCTCGTCTCTCAGACTATGGTTTGGCATCCTTCTATCAGCGTACTAGCCAAAATCTTGGGGCAGGATATAATGCACCAGAATGCACAAAACCTTCAGCCTATACCCTGAAAAGTGATGTATACAGTTTTGGGGTAGTCATGCTGGAATTATTGACAGGTCGAATGCCTTTAGACAGTTCAAAGCCAAAACCAGAACAATGTCTCGTTCGTTGGGCCACCCCACAGCTTCATGACATCAATGCGTTGGAAAAAATGGTTGACCCTGCCTTGCGGGGACTTTACCCTCCTAAATCACTCTTCCGATTTGCTGATATCGTCGCTCTTTGTGTTCAGTCTGAGCCCGAATATCGGCCATCTGTGTCAGAGGTGGTTCAGGCATTGGTGCGATTAGTTCAGCGTTCAAGTATGAAAATGAGAGAGGAACTTGAAGCCTATGGTCGGATCGATGATTATGATGACTCATCCATTGTATAA 2118 0.4145 MHHNLARLWIALLAVSTTLVHCKTASQDVSALNVMYTSLNSPSQLSGWKSSGGDPCGDSWERIKCSGSSVTEINLSDLGLTGSMGYQLSSLTSVTYFDLSNNNLKGDIPYQLPPNARYIDLSKNGFTGGVPYSISQMSDLNHLNLGHNRLNNQLGDMFKKLTKLKQLDLSFNSMSGNLPQSLKSLSSLKKLHLENNQFSGSVNVLANLPLEELNVENNKFTGWFPEELKDINSLETGGNSWSTGPAPPPPPGTPPIKHSEKKKNEKSVVSGVAIAGIAFGVLAIIIIVIALSKKRSSLRSSLPSSHFMDEEKNSQRRSFTPLASQELSKDSGADVSKEYKGFKSLDSTSIDIKTLQKAPSIDVRSSISDCVQSFNDIEFANRLNARRSTSIRCIPFSLAELQTVTANFASGRLLGEGSIGRVYRAKYADGKVLAVKKINSSLFHGGPPEEFSQIVSNIWKLHHPNIAELVGYCSEQEHMLIYDYFRNGSLHDFLHLSDDFSKPLTWNTRIRIALGTARAVEYLHEICSPSLVHKNIKSSNILLDTDLNPRLSDYGLASFYQRTSQNLGAGYNAPECTKPSAYTLKSDVYSFGVVMLELLTGRMPLDSSKPKPEQCLVRWATPQLHDINALEKMVDPALRGLYPPKSLFRFADIVALCVQSEPEYRPSVSEVVQALVRLVQRSSMKMREELEAYGRIDDYDDSSIV 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2172g00009 705 MobiDBLite consensus disorder prediction 301 331 - -
Gabi2172g00009 705 Pfam Protein tyrosine and serine/threonine kinase 411 675 IPR001245 GO:0004672|GO:0006468
Gabi2172g00009 705 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Gabi2172g00009 705 MobiDBLite consensus disorder prediction 234 264 - -
Gabi2172g00009 705 Gene3D Ribonuclease Inhibitor 23 255 IPR032675 -
Gabi2172g00009 705 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 70 676 - -
Gabi2172g00009 705 SUPERFAMILY L domain-like 25 235 - -
Gabi2172g00009 705 ProSiteProfiles Protein kinase domain profile. 408 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2172g00009 705 Gene3D Transferase(Phosphotransferase) domain 1 485 702 - -
Gabi2172g00009 705 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 252 - -
Gabi2172g00009 705 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 374 484 - -
Gabi2172g00009 705 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 485 689 - -
Gabi2172g00009 705 Pfam Leucine rich repeat 114 173 IPR001611 GO:0005515
Gabi2172g00009 705 SUPERFAMILY Protein kinase-like (PK-like) 388 675 IPR011009 -
Gabi2172g00009 705 Gene3D Phosphorylase Kinase; domain 1 368 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2172g00009 Gabi-Chr2172 99560 109462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2172g00009 1 700 Strubbelig Receptor Gene Family AT1G78980 62.323 0.0 879
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Gabi2172g00009 PK_Tyr_Ser-Thr 6.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2172g00009 - - qsa:O6P43_028034 1062.37