Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2171g00030 ATGGATCACTCCCAAATAATAACTATTGAAGACATTGACGTGAGTGGGAGTTTAGCACGTTATGATGATGTTGTTGATTTGGAGAAAGACACTGATGAGTTTGTTGATGATGATGAGTGTGAAATTATGGAAGATGAAGATGGTGATCATGTGCAAAATGTTGTACTTGAAATTGTGGGAGATGATATCAATGAATTTAGTGAGACTAGTTTTTTATGTAGGGTCTTTGGGACATCAGAAGAAGCTTATGTTTTTTATAATGATCATGCAAAAGGTAAGGGGTTTGGAATACGTAAGCAATTTTTTAACAAGAGTGCAAGAACACAGCAAATATATAGGTGGAGGTATGTGTGTTCGAAAGAAGGCATCAAGAAAGTGAATGATAAAGTAGTTAAAAGGCGAAGGGATACAAGGACTAATTGTTTGGCGATGTTACAAATAAAGTTGGTGGATGGAGTATGGAAAGTGGAGAAGTTCAATGATACACACAATCATTCATTGATTAACACTCCATCAAAGGTGAAGAAGTTTTCTTCTCAGAATGAATTACGACGCTCAAAGTTTACTAAATCTCTTGTTTCTATGCTTTCTGAGGAGGGTTTAACTTCTTCAAAAATCTCAAAGGTGGTGAATGCTATGGACAAAGAAGTTAATATTACTCCAGTGCAAATCTCCACTATTATATCAAGCCAACGAAAGAATAATGTGGGGCGAGAATGTCAAGGCATCATTAAACACTTTCAAAGGAAGTCTGTTCTTGATGGATCTTTTTATTTTGATATGCATTTAGCCGAAGATGGAACATTAAGAAGCGTATTCTGGGCGGATGGTAGGTCAAGAGCAGCATATGTTCAATTTGGTGATGTTCTTGTGTTTGATGTGACTTACCAAACAAATAAGTTCAAGTTTCCCTTTGCCCCTTTCGTTGGGGTTAATCACCATGGGCAATCAATTTTATTTGCAGCCGCTTTGTTAGAAGATGAAACAGAGGCAACATTTACATGGTTGTTTGAACAATTTCTGGAATGTATGTTTGATAAGTCTCCTATTGCTATTATCACTGATCAAGACAAAGCTATTGGAAAAGCAATTGCCAAAATATTTCCAAAAGCACGACATCGTTTTTGTGCGTGGCACATGAAAAAACATGTTATGGAACACACTCAAGCACTACGCTCACAATTTAAGGAGAGTTTTGATGTTGACTTTCGTGCATGGTATAAAAGTCGAAGCATTGATGAGTTTGAAGGCAGCTGGGAATCATTGAAGACTAAATATGATATTAAAGAAGGAACTTGGTTGGCTAACATGTATGTTTCACGTCATCATTGGGCAAAGGTATATTTGAAAGATACTTTTTGGGCTGGAATGACCACAAGTGGCCGAAGTGAGAGCATCAATGCTTTTTTTGATGGATACGTCAACTCCAACACAATGTTAAATGACTTTGTTACTCAATATGACAAAGCAATTAAGAGTAGGAGGGATGCTGAAGAAGATGAAGATTTTAAAACTAGAAATACAAAAGCAATTTTGGAGACTACTCATCAAATTGAAGCAATAGCTGGTGAGCGTTACACAAGAAAAATATTTAATATATTTAAAAAGGAGTGGATGGAAGCTGTTCTTCATTATGAGCATGAAAAGATTTTAATGAATGAAGATCTAATCAGGTACAAGGTGGGGTCTCACGAAGTTGATAAAGAGTGGTGGGCAATTGTTGACTATCATTTGACAGAAACCTTCACAGCTGATTGTTCTTGTGGAAAATTTCAGACTATGGGAATTTTGTGCAAACATATTCTATATATTATGAGGAGGAAAAAATTAAAAACCCTTCCTGAAAAATATATTTTGTCTAGATGGACCATGAATGCAAGCTATAAGGTTGAAAATCTTGTAGGTGATCATGCTGATACACCCACTAAGGAAGTTAGTGCATTGTTCTTGTGGTCGCTTCACTCCAAGTGCAATATGGCTATTTCCGAAGCAAGAGATTGTATGTCTGAAATTAGAAAGTTTGATGATTTTCTTGCTGACTTTATTAGACAGCAACTGGAAAGAAAGAGAAATATAATTGAAGATGAAGCAATTCCCCAAGTTGTTCCTTCACTAACTCCCGAAATTCTTTCACAAGTTTCACTCATTAACTATGTGCGTGATCCCATGCATCCAGTCAAAACTAAAGGGCGTCCAAAGGTTGCTTCACGATTGAAATCAAGCATTGAGTTGATTTCAAAACAACATAAGACTTGTAGTTATTGTGGAGGAAAGGGTCACAATAAAACCAGTTGTGAGAAGCGCAAGATGGATATTGCAAGAGAGAAGCAAAAGGAGTAG 2340 0.365 MDHSQIITIEDIDVSGSLARYDDVVDLEKDTDEFVDDDECEIMEDEDGDHVQNVVLEIVGDDINEFSETSFLCRVFGTSEEAYVFYNDHAKGKGFGIRKQFFNKSARTQQIYRWRYVCSKEGIKKVNDKVVKRRRDTRTNCLAMLQIKLVDGVWKVEKFNDTHNHSLINTPSKVKKFSSQNELRRSKFTKSLVSMLSEEGLTSSKISKVVNAMDKEVNITPVQISTIISSQRKNNVGRECQGIIKHFQRKSVLDGSFYFDMHLAEDGTLRSVFWADGRSRAAYVQFGDVLVFDVTYQTNKFKFPFAPFVGVNHHGQSILFAAALLEDETEATFTWLFEQFLECMFDKSPIAIITDQDKAIGKAIAKIFPKARHRFCAWHMKKHVMEHTQALRSQFKESFDVDFRAWYKSRSIDEFEGSWESLKTKYDIKEGTWLANMYVSRHHWAKVYLKDTFWAGMTTSGRSESINAFFDGYVNSNTMLNDFVTQYDKAIKSRRDAEEDEDFKTRNTKAILETTHQIEAIAGERYTRKIFNIFKKEWMEAVLHYEHEKILMNEDLIRYKVGSHEVDKEWWAIVDYHLTETFTADCSCGKFQTMGILCKHILYIMRRKKLKTLPEKYILSRWTMNASYKVENLVGDHADTPTKEVSALFLWSLHSKCNMAISEARDCMSEIRKFDDFLADFIRQQLERKRNIIEDEAIPQVVPSLTPEILSQVSLINYVRDPMHPVKTKGRPKVASRLKSSIELISKQHKTCSYCGGKGHNKTSCEKRKMDIAREKQKE 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2171g00030 779 ProSiteProfiles Zinc finger SWIM-type profile. 576 609 IPR007527 GO:0008270
Gabi2171g00030 779 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 71 651 IPR031052 GO:0006355
Gabi2171g00030 779 Pfam SWIM zinc finger 582 602 IPR007527 GO:0008270
Gabi2171g00030 779 Pfam FAR1 DNA-binding domain 85 168 IPR004330 -
Gabi2171g00030 779 Pfam MULE transposase domain 289 382 IPR018289 -
Gabi2171g00030 779 SMART 26again6 584 611 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2171g00030 Gabi-Chr2171 300962 303440 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi2171g00030 MULE 8.8e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2171g00030 - - lsv:128127215 718.768