Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2171g00024 ATGGCTTCCGATCTCGAAGCTAAAGCCAAAGAGGCTTTCGTCGATGAACACTACGAGCTTGCCTTTGACCTTCTCACTCAGGCTATTGCCCTCAGCCCTAACAACGCCGACCTCTATGCCGACCGTGCTCAGGCCAACATAAAACTCAATAATTTCACTGAGGCTGTTGCTGATGCAAAGAAGGCAATTGAGTTGAATCCTTCTCATTCAAAAGCATATTTGCGCAAAGGTACTGCATGCATCGAGCTTGAGGAATATGAGACTGCTAAGGCAGCTCTAGAGATGGGTGCTTCATTGGCTCCTGGAGACTCAAAATTCTCTGATTTGATCAAAAAATGTGATAAGCTCATTGCGGAAGAATCTGGTGTCATATCCAGACAAGAAAAAACTGTGACACAGGGTGTTTCTACAAAGGGTGTTCAGTCACAAAATGATCTTCAAGAACCACAGACAGTAACAGCGCCTAAACCTAAATACAGGCATGAATTCTACCAGAAATCTAATGAGGTGGTTGTTACCATATTTGCAAAGGGCATTCCGCAGCACAGTATTGATGTTGACTTTGGTGAACAAATCCTAAGTGTTAGCATTAATGTCCCTGGCGAAGATGCATATGTCTTTCAACCTCGCTTATTTGGAAAGATCATACCCACAAGTTGCCGGTATGAAGTTTTGTCCACCAAAATTGAAATTCGCCTTGCAAAAGCAGAACCTATCCATTGGTCATCTCTAGAATTCAGCAGTAGTATTGGAGCTCCACAGAGGGTTAATGTTTCCTCAGTTGCTGGAGGTGAAAGACCTAATTACCCATCCTCAAAACAAACAAGAGATTGGGACAAGCTGGAAGCTCAAGTTAAGAAAGAGGAAAAAGAAGAAAAGCTTGATGGTGATGCAGCGTTGAACAAATTTTTCCGTGAGATATATCAGGATGCAGATGAAGACACAAGAAGAGCAATGAGTAAATCATTTGTGGAGTCTAATGGAACTGTACTCTCTACAAACTGGAAAGAAGTGGGATCAAAGAAGGTAGAGGGAAGTCCTCCAGATGGCATGGAGTTGAGGAGATGGGAATATTAA 1077 0.4271 MASDLEAKAKEAFVDEHYELAFDLLTQAIALSPNNADLYADRAQANIKLNNFTEAVADAKKAIELNPSHSKAYLRKGTACIELEEYETAKAALEMGASLAPGDSKFSDLIKKCDKLIAEESGVISRQEKTVTQGVSTKGVQSQNDLQEPQTVTAPKPKYRHEFYQKSNEVVVTIFAKGIPQHSIDVDFGEQILSVSINVPGEDAYVFQPRLFGKIIPTSCRYEVLSTKIEIRLAKAEPIHWSSLEFSSSIGAPQRVNVSSVAGGERPNYPSSKQTRDWDKLEAQVKKEEKEEKLDGDAALNKFFREIYQDADEDTRRAMSKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELRRWEY 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2171g00024 358 Gene3D - 157 247 IPR008978 -
Gabi2171g00024 358 Pfam Tetratricopeptide repeat 36 69 IPR013105 -
Gabi2171g00024 358 SUPERFAMILY HSP20-like chaperones 150 250 IPR008978 -
Gabi2171g00024 358 FunFam Protein SGT1 homolog 1 133 - -
Gabi2171g00024 358 Pfam CS domain 160 235 IPR007052 -
Gabi2171g00024 358 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Gabi2171g00024 358 PANTHER PROTEIN SGT1 HOMOLOG 1 356 IPR044563 GO:0051087
Gabi2171g00024 358 ProSiteProfiles SGS domain profile. 268 358 IPR007699 -
Gabi2171g00024 358 Pfam SGS domain 276 356 IPR007699 -
Gabi2171g00024 358 ProSiteProfiles CS domain profile. 156 245 IPR007052 -
Gabi2171g00024 358 FunFam Protein SGT1 homolog A 154 258 - -
Gabi2171g00024 358 Gene3D Tetratricopeptide repeat domain 1 151 IPR011990 GO:0005515
Gabi2171g00024 358 SMART tpr_5 70 103 IPR019734 GO:0005515
Gabi2171g00024 358 SMART tpr_5 36 69 IPR019734 GO:0005515
Gabi2171g00024 358 SMART tpr_5 2 35 IPR019734 GO:0005515
Gabi2171g00024 358 MobiDBLite consensus disorder prediction 260 279 - -
Gabi2171g00024 358 Pfam Tetratricopeptide repeat 71 101 IPR019734 GO:0005515
Gabi2171g00024 358 SUPERFAMILY TPR-like 6 107 IPR011990 GO:0005515
Gabi2171g00024 358 CDD p23_CS_SGT1_like 162 245 - -
Gabi2171g00024 358 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2171g00024 Gabi-Chr2171 238966 242794 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2171g00024 1 101 U-box Gene Family AT3G07370 31.429 5.66e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2171g00024 K12795 - gmx:100780174 563.918