Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2171g00003 ATGTCGTCGCCGGGGTTCTCGGGCGGTGGAGCCTCGGATTTCTTCGGCGGAGCAGCAGGTTTTCCCGGCCGATCCATTACACTTCCACCCAACAACAACAACAACAACAACAACACCCCCTCCATCACCACCGCCACCACCAACAACCTTCACCCTTCTCACCCTCTGTACCGAACCCAGCAACAACTCCCTGCAATTTTCCTTGACCCTTCATCTCACATCGCCAAACGCCAAACATCCCCTCTCATCGGTAAACGCACCCTCGCCGAATTTCATAACCTTAATAACTACAATAACCATAACTCAGTCCTTTCCAACTATCTACTTCGTTCTGTGAAGCCCAGGACTTTCCAGCATGGTTCTCTTTCTCCGATGGATTTTTCCATTTCCCCTTCTGAATTCCCCAACTCTTCGGGCTTCCCTTCACAGCGTTTCGGCTTACCCATTCACCACCTTCGCCCAAATCCCGTTAATCTCACCACCGCTCAAACCCCGTTACCCATGAATAATTCGATCCTCCCAAACACAAATTTCCCATACCCAAATTCCAGTTTGGCTCAGGTTCACAACAGAATAACAACCCATGAACCAGAGAAGAAGATGATGGACCATCGTCTGCAGGAGTTGGAAAAACAGCTTTTGGAAGACAATGATGATGAGGAAGGTGATGCAGTTTCTGTGATTACCAACTCTGAATGGCACTCGGAGACAATACAAAGCTTGATTGCTCCCGGGCAGACTCAGACCCAGAAACCTGTACCCGTTTCGTCCTCGCCCACTTCGTCTACAACGTCGTCGAACTCATCTTCTTCCTCTGTGGCTTCACCTGCTTCGAGCTGTTCCAAGCTATCGTTAATGGAGGCCGCATCGGCGATTTCCGAAGGGAAATTAGATGCTGCGACGGAGATCCTCGCCCGTTTGGTGCAGGCTTCGAACACAACCGGGAATTCGGATCAACGATTCACGGATTGCATGGTTTCAGCGCTGAAATCGCGCATAAACCCGGTTGAAAATCCACCACCCGTGGCGGAGCTGTTCAGCAAGGAACATGCCGAGTCAACTCAGTTGCTCTTCGAACACTCCCACTGCTTCAAGGTTGCTTTCATGGCTGCCAACCTCGCAATGCTCGAAGCCGCATTCGACGATGAAAACGAGAACGCCAACAACGGCGTCAAGTTATGCGTGGTGGATTTCGATATCGGCCATGGGGGGCAATACGCGAACCTTCTTCACGAGTTCTCAGCGCGTCTTAACGGCAAGCCTGGCACGGTGAAGATCACGGCCGTGGCGGAGAACGGTTCTGGCGAGAGGTTGAAGACGGTGGGCATGATGCTGGGTCGACAAGCGGAGCTACTCAGGATTGGGTTTGAATTCAAAGTTGTATCTAACAAACTCGCCGAGTTGACTCGCGAGTCCCTGGGTTGTGACCCGGTGGGGCCGCTGGCTGTGAACTTTGCGTTCAAGCTTTACAGAATGCCAGACGAGAGCGTGTCGACAGAGAATCCACGCGACGATCTTCTCCGCCGCGTGAAGGCACTCGCGCCTAGCGTGGTGACGCTGGTGGAGCAAGAGATGAACACCAATACGGCGCCGTTTGCGGGTCGTGTGGCCGAGTCGTGTTCTTATTATGGCGCGCTTTTTGACTCAATTGAGTCGACGCCAACACGGGACAACTCGGAGCGAGTTAAGATAGAGGAGGGATTGAGTCGGAGGCTGGGCAACTCGATCGCTTGCGAAGGGAGGGATCGCGTGGAACGGTGCGAGGTTTTTGGAAAGTGGCGCGCCCGCATGAGCATGGCGGGTTTCAAGTTGAAACCGGTGAGTCAGAGGGTGGCCGAGTCAATCAAAGCGCGACTCGGTCATGGAAACCGAGTCACGGTGAGAGAAGAGAACGGTGGGATTTGCTTTGGGTGGATGGGAAGAACTATTACCGTCGCATCTGCTTGGCGTTAA 1953 0.531 MSSPGFSGGGASDFFGGAAGFPGRSITLPPNNNNNNNNTPSITTATTNNLHPSHPLYRTQQQLPAIFLDPSSHIAKRQTSPLIGKRTLAEFHNLNNYNNHNSVLSNYLLRSVKPRTFQHGSLSPMDFSISPSEFPNSSGFPSQRFGLPIHHLRPNPVNLTTAQTPLPMNNSILPNTNFPYPNSSLAQVHNRITTHEPEKKMMDHRLQELEKQLLEDNDDEEGDAVSVITNSEWHSETIQSLIAPGQTQTQKPVPVSSSPTSSTTSSNSSSSSVASPASSCSKLSLMEAASAISEGKLDAATEILARLVQASNTTGNSDQRFTDCMVSALKSRINPVENPPPVAELFSKEHAESTQLLFEHSHCFKVAFMAANLAMLEAAFDDENENANNGVKLCVVDFDIGHGGQYANLLHEFSARLNGKPGTVKITAVAENGSGERLKTVGMMLGRQAELLRIGFEFKVVSNKLAELTRESLGCDPVGPLAVNFAFKLYRMPDESVSTENPRDDLLRRVKALAPSVVTLVEQEMNTNTAPFAGRVAESCSYYGALFDSIESTPTRDNSERVKIEEGLSRRLGNSIACEGRDRVERCEVFGKWRARMSMAGFKLKPVSQRVAESIKARLGHGNRVTVREENGGICFGWMGRTITVASAWR 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2171g00003 650 MobiDBLite consensus disorder prediction 26 55 - -
Gabi2171g00003 650 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 266 638 IPR005202 -
Gabi2171g00003 650 MobiDBLite consensus disorder prediction 242 277 - -
Gabi2171g00003 650 MobiDBLite consensus disorder prediction 22 55 - -
Gabi2171g00003 650 ProSiteProfiles GRAS family profile. 272 650 IPR005202 -
Gabi2171g00003 650 Pfam GRAS domain family 284 650 IPR005202 -
Gabi2171g00003 650 Coils Coil 199 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2171g00003 Gabi-Chr2171 69501 71748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2171g00003 46 650 GRAS Transcription Factor Family AT5G52510 48.844 2.71e-162 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi2171g00003 GRAS 9.6e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2171g00003 - - tpra:123914170 773.081