Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2170g00012 ATGGGGAAGACAGGAAAATGGCTTAGAAACTTTTTGACAGGGAAGAAAGACAAAGAAAAAGAGAAGGAAAAATGTGCAACCAACCTGAGTTTGTTAAATGGCACAGATAATCCAACTACTCCAATTTCAGCAACCCAGAAGGAGAAAAGAAGATGGAGTTTCCGAAGATCATCAGCTTCAGCAACAGCTTCCAAGGAATTGAATTTTGCAGAACCGAGTGTGACTGCTTCAGTGACAGTGCAAACTGCCACAGATGCTGAGAATGATAAAAGGAAGCATGCCATGACTGTTTTCAATGTAACTACTACAAGTATTGAAGAGGCTTCTGCCATTAGAATTCAATCTGTGTTTAGGTCCTACTTGGCAAGAAAGGCACTGTGTGCTCTTAGAGGAATAGTAAAGTTGCAGGCACTAGTAAGGGGTCGCTTGGTGAGAAAACAGGCCACTGAGACACTAAGATGCATGCAGGCTTTGGTCATAGCACAAGCTAGAGCTCGCGCTCAGAAGGCTCGAATGGTATCAGAAGGAAAACACAATCAAAAGCAATCACCCTACAGAAAAACCACCGAGGACAATTTATTCATGAATATCTACAATGAAATGGACAGAGGATTAGAAGAGAATACCAAGATTGTGGAAATAGATGTTTGTGAATCCGATGGTAACTCAAGAGGCAGAAACAACACTGCAAATTATGGACATTGTGAATTGTCTGAGCATAGATTTTCTACATATTATTCATCAAATGGTTCATATTCAAAGGAAGAAAACCACAAGGTATCACCTGCACCATCAGCATTGACAGAGTTGAGTCCAAGAGCATGTAGTGGGCATTTTGAGGATTGTTCCTTCAGCACAGCACAAAGCACTCCTCATTACTATTCTGATGTGTCAAGAGTAGAGGATTCAAAGCTTCCTTTTGCTTTCCCTAGACCATCCTATGCAGAATCCATGTCCTATGACTACCCTTTATTCCCAAACTACATGGCTAACACAGAATCTTCAAGGGCCAAAGTTAGATCACATAGTGCACCAAAGCAAAGGCCAGACTCATATGAGAGGCAACCGAGCAGGAGAAGAGTTTCAGTGGGAGAAAGAAATGTTCCAAGGCCAGTGAGGATGCAAAGGTCATCTTCACATGTAGGTGTCACTACCCAAAACTATCAATATCCATGGTCAATAAAGCTTGACAGGTCCTCAGTTTCACTCAGAGACAGTGAGTGTGGCTCTACAAGTACAGTGCTCACAAACTCTAATTACTGCGGATCACTTGCTTCATATGATGTGAGTACTTACCATTCTCATATTGACATGCTTTTACCATACAGCTGA 1332 0.4182 MGKTGKWLRNFLTGKKDKEKEKEKCATNLSLLNGTDNPTTPISATQKEKRRWSFRRSSASATASKELNFAEPSVTASVTVQTATDAENDKRKHAMTVFNVTTTSIEEASAIRIQSVFRSYLARKALCALRGIVKLQALVRGRLVRKQATETLRCMQALVIAQARARAQKARMVSEGKHNQKQSPYRKTTEDNLFMNIYNEMDRGLEENTKIVEIDVCESDGNSRGRNNTANYGHCELSEHRFSTYYSSNGSYSKEENHKVSPAPSALTELSPRACSGHFEDCSFSTAQSTPHYYSDVSRVEDSKLPFAFPRPSYAESMSYDYPLFPNYMANTESSRAKVRSHSAPKQRPDSYERQPSRRRVSVGERNVPRPVRMQRSSSHVGVTTQNYQYPWSIKLDRSSVSLRDSECGSTSTVLTNSNYCGSLASYDVSTYHSHIDMLLPYS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2170g00012 443 Gene3D - 106 154 - -
Gabi2170g00012 443 MobiDBLite consensus disorder prediction 28 57 - -
Gabi2170g00012 443 Pfam IQ calmodulin-binding motif 130 147 IPR000048 GO:0005515
Gabi2170g00012 443 Pfam IQ calmodulin-binding motif 108 126 IPR000048 GO:0005515
Gabi2170g00012 443 Pfam Protein of unknown function (DUF4005) 310 366 IPR025064 -
Gabi2170g00012 443 MobiDBLite consensus disorder prediction 336 381 - -
Gabi2170g00012 443 ProSiteProfiles IQ motif profile. 130 157 IPR000048 GO:0005515
Gabi2170g00012 443 ProSiteProfiles IQ motif profile. 106 134 IPR000048 GO:0005515
Gabi2170g00012 443 MobiDBLite consensus disorder prediction 339 366 - -
Gabi2170g00012 443 MobiDBLite consensus disorder prediction 28 47 - -
Gabi2170g00012 443 PANTHER IQ-DOMAIN 5-RELATED 1 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2170g00012 Gabi-Chr2170 161915 164301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2170g00012 1 420 IQD Protein Family AT4G14750 45.982 1.17e-98 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2170g00012 - - gmx:100817667 583.563