Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi216g00006 ATGGACAAACATTCCGGGGATTCTTTGCCTGCTCATGGTGTTGTAGGCCTATCTGAGATTTCCTCACTTAATATTCCAAAAAAGGTGGGAAGCAGTGCATGGGGAATACCGCATGCGACTAATGTATTTCATGATTCAAGTGATGTTAGCTTCTTTTCTAGTTCACTGCCTGTTCTTCCACACGAAAAGTTAAATTTGACTGATTCTGAGCATCATGATCAACCGGTTGATGATAACTTGCTGACATTAGATAAAGTTCACAAAGAGGATGAGGGACATGATCCTTTCATTGATTTTGAAACCAATGCAATTGGAAACATGCTTCCTGATGATGAAGACGAGCTTTTAGCTGGGATAATGGATGATCTTGACCTTAGTAGGTTGCCCAGCCAACTGGAGGATTTGGATGAAAATGATCTGTTTATCAATGGAGGGGGGTTTGAAATGGACTTTGAACCCCAGGACAGCCTTAGTATTGGTATGTCAAAAATAAGCATGTCAGATTTAGTTGCGTCAAATGGTATTGGTCATTATGCAATCCCAAATGGCGTGGGAACAGTGGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAACAGTAATGTCGAGGACTCTGAATTACGAACACTGTTTGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGACATTCGAGCTGCTCGAACTGCAATGCGCGCTTTACAAAACAAGCCATTGAGACGAAGAAAACTTGATATCCATTTTTCAATTCCTAAGGATAACCCCTCGGAAAAAGATATTAACCAAGGAACCCTTGTTGTGTTCAATTTAGATCCATCAGTATCGAATGATGACCTTCGTCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCACACAAGAGACACCATAAATTTATTGAGTTTTATGATGTTAGAGCAGCAGAGGCAGCTCTTAAAGCATTGAATCGGAGTGATATTGCTGGGAAACGCATAAAACTTGAACCCAGCCGCCCTGGTGGAGCGCGTAGAAACTTGATGCAACAACTGAGTCAAGAACTGGAACAAGATGAAGCTCGAACTTTTAGGCATCAAGTAGGTTCACCTCTGGCCAGTTCTCCTCCGGGTAACTGGGCACAGTTTGGTAGTCCTGTTGAACACAATCCATTAGGTTCTTTTAGCAAGTCCCCTGGTTTGGGTCATGCCAGCCCTATGAATATTAACCATTTGTCTGGATTGGCTGCAATTCTTTCTCCGCATGCATCAACCTCTACCAAGATTGCACCAATTGGCAAGGACCCTGGCAGGGCTGCAAATCAGATGTTTGCAAACTCTGGTTCAACACAAGCAGCAGCTTTTCAGCATTCTATGTCCTTTCCTGAGCAAAAAGTAAATGCCAGTCCTAGGCCTATATCTACTTTTGGTGAATCAAATTCAAGTTCATCAAGTATTGGAACACTGTCTGGTCCTCAATTTCTTTGGGGGAGCCCAACTCCTTATTCAGAGCATTCAAACACATCTGCCTGGTCTTCATCTTCTGTGGGTCTTCCATTTACTTCTAGTAGCCAAAGGCAGGGTTTCCCATATACTAGTCACCGTGGTCCTTTTCTTGGCTCCCAGCCCCATCATCATGTAGGATCTGCTCCATCTGGCCTTCCTCTTGATAGGCATTTTAGTTACTTCCCAGAGTCCCCTGAAACTTCTCTCGTGAACCCGGTTGCATTTGGGAATTTGAATCATGGTGACGGGAATTTTATGGTGAACATGGGTGCTCATGCATCTTTAGGAGTTGGTGTTGGCCTTTCAGGAAATACCACTGAAATTAGTTCACCAAGTTTCAGAATGATGTCACTGCCTAGGCATGGTTCCTTGTTCCTTGGAAATGGTTCATATTCTGGACCAGGAGCAACTAACATTGAGGGATTAGCTGACCGTGGACGAGGCAGGCGACCTGATAATAATGGGAACCAAATTGATAGTAAGAAACTGTACCAGCTTGATCTAGACAAAATCATCAGCGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTACACTTCGAAGATGCTGCTTGCTGCAATTGATGAGAATCACCGGGGTACTTATGACTTTCTCTACTTACCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTCATCAATATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCATTTAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCATCATTGGCATATGCACGGATACAAGGAAAGGCTGCGCTTGTAATGCATTTTCAGAATTCGAGCTTAATGAACGAGGATAAGAGGTGCCGGCCAATTCTCTTTCATTCAGAGGGCCAAGATACTGGTGACCAGGAACATTTTCTATCCAGCAATTTGAATATATGCATTCGTCAACCAGATGGGTCTTACTCTGGTGATTTGTTGGAGAGCCCCAAGGGCAATTTGGATGAGAAGCTAGAGAAAGATTAA 2571 0.4282 MDKHSGDSLPAHGVVGLSEISSLNIPKKVGSSAWGIPHATNVFHDSSDVSFFSSSLPVLPHEKLNLTDSEHHDQPVDDNLLTLDKVHKEDEGHDPFIDFETNAIGNMLPDDEDELLAGIMDDLDLSRLPSQLEDLDENDLFINGGGFEMDFEPQDSLSIGMSKISMSDLVASNGIGHYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVGSPLASSPPGNWAQFGSPVEHNPLGSFSKSPGLGHASPMNINHLSGLAAILSPHASTSTKIAPIGKDPGRAANQMFANSGSTQAAAFQHSMSFPEQKVNASPRPISTFGESNSSSSSIGTLSGPQFLWGSPTPYSEHSNTSAWSSSSVGLPFTSSSQRQGFPYTSHRGPFLGSQPHHHVGSAPSGLPLDRHFSYFPESPETSLVNPVAFGNLNHGDGNFMVNMGAHASLGVGVGLSGNTTEISSPSFRMMSLPRHGSLFLGNGSYSGPGATNIEGLADRGRGRRPDNNGNQIDSKKLYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTGDQEHFLSSNLNICIRQPDGSYSGDLLESPKGNLDEKLEKD 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi216g00006 856 CDD RRM1_MEI2_like 198 274 IPR034453 -
Gabi216g00006 856 MobiDBLite consensus disorder prediction 478 501 - -
Gabi216g00006 856 Coils Coil 850 856 - -
Gabi216g00006 856 FunFam Protein MEI2-like 1 283 378 - -
Gabi216g00006 856 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Gabi216g00006 856 Pfam RNA recognition motif 2 696 792 IPR007201 -
Gabi216g00006 856 Gene3D - 283 381 IPR012677 -
Gabi216g00006 856 SUPERFAMILY RNA-binding domain, RBD 698 783 IPR035979 GO:0003676
Gabi216g00006 856 Gene3D - 188 282 IPR012677 -
Gabi216g00006 856 CDD RRM2_MEI2_like 283 353 - -
Gabi216g00006 856 FunFam MEI2-like protein 5 isoform 2 188 282 - -
Gabi216g00006 856 SMART rrm1_1 698 774 IPR000504 GO:0003723
Gabi216g00006 856 SMART rrm1_1 285 353 IPR000504 GO:0003723
Gabi216g00006 856 SMART rrm1_1 200 268 IPR000504 GO:0003723
Gabi216g00006 856 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
Gabi216g00006 856 CDD RRM3_MEI2_like 699 784 IPR034454 -
Gabi216g00006 856 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Gabi216g00006 856 PANTHER RNA RECOGNITION MOTIF-CONTAINING 99 823 - -
Gabi216g00006 856 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Gabi216g00006 856 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi216g00006 Gabi-Chr216 112654 121450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi216g00006 194 507 Eukaryotic Initiation Factors Gene Family AT3G16380 23.209 1.64e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi216g00006 - - gmx:100812324 1538.86