Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi216g00004 ATGGACAAACATTCCGGGGATTCTTTGCCTGCTCATGGTGTTGTAGGCCTATCTGAGATTTCCTCACTTAATATTCCAAAAAAGGTGGGAAGCAGTGCATGGGGAATACCGCATGCGACTAATGTATTTCATGATTCAAGTGATGTTAGCTTCTTTTCTAGTTCACTGCCTGTTCTTCCACACGAAAAGTTAAATTTGACTGATTCTGAGCATCATGATCAACCGGTTGATGATAACTTGCTGACATTAGATAAAGTTCACAAAGAGGATGAGGGACATGATCCTTTCATTGATTTTGAAACCAATGCAATTGGAAACATGCTTCCTGATGATGAAGACGAGCTTTTAGCTGGGATAATGGATGATCTTGACCTTAGTAGGTTGCCCAGCCAACTGGAGGATTTGGATGAAAATGATCTGTTTATCAATGGAGGGGGGTTTGAAATGGACTTTGAACCCCAGGACAGCCTTAGTATTGGTATGTCAAAAATAAGCATGTCAGATTTAGTTGCGTCAAATGGTATTGGTCATTATGCAATCCCAAATGGCGTGGGAACAGTGGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAACAGTAATGTCGAGGACTCTGAATTACGAACACTGTTTGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGACATTCGAGCTGCTCGAACTGCAATGCGCGCTTTACAAAACAAGCCATTGAGACGAAGAAAACTTGATATCCATTTTTCAATTCCTAAGGATAACCCCTCGGAAAAAGATATTAACCAAGGAACCCTTGTTGTGTTCAATTTAGATCCATCAGTATCGAATGATGACCTTCGTCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCACACAAGAGACACCATAAATTTATTGAGTTTTATGATGTTAGAGCAGCAGAGGCAGCTCTTAAAGCATTGAATCGGAGTGATATTGCTGGGAAACGCATAAAACTTGAACCCAGCCGCCCTGGTGGAGCGCGTAGAAATGATGCATTTTCTCTTGTTAGCTTGATGCAACAACTGAGTCAAGAACTGGAACAAGATGAAGCTCGAACTTTTAGGCATCAAGTAGGTTCACCTCTGGCCAGTTCTCCTCCGGGTAACTGGGCACAGTTTGGTAGTCCTGTTGAACACAATCCATTAGGTTCTTTTAGCAAGTCCCCTGGTTTGGGTCATGCCAGCCCTATGAATATTAACCATTTGTCTGGATTGGCTGCAATTCTTTCTCCGCATGCATCAACCTCTACCAAGATTGCACCAATTGGCAAGGACCCTGGCAGGGCTGCAAATCAGATGTTTGCAAACTCTGGTTCAACACAAGCAGCAGCTTTTCAGCATTCTATGTCCTTTCCTGAGCAAAAAGTAAATGCCAGTCCTAGGCCTATATCTACTTTTGGTGAATCAAATTCAAGTTCATCAAGTATTGGAACACTGTCTGGTCCTCAATTTCTTTGGGGGAGCCCAACTCCTTATTCAGAGCATTCAAACACATCTGCCTGGTCTTCATCTTCTGTGGGTCTTCCATTTACTTCTAGTAGCCAAAGGCAGGGTTTCCCATATACTAGTCACCGTGGTCCTTTTCTTGGCTCCCAGCCCCATCATCATGTAGGATCTGCTCCATCTGGCCTTCCTCTTGATAGGCATTTTAGTTACTTCCCAGAGTCCCCTGAAACTTCTCTCGTGAACCCGGTTGCATTTGGGAATTTGAATCATGGTGACGGGAATTTTATGGTGAACATGGGTGCTCATGCATCTTTAGGAGTTGGTGTTGGCCTTTCAGGAAATACCACTGAAATTAGTTCACCAAGTTTCAGAATGATGTCACTGCCTAGGCATGGTTCCTTGTTCCTTGGAAATGGTTCATATTCTGGACCAGGAGCAACTAACATTGAGGGATTAGCTGACCGTGGACGAGGCAGGCGACCTGATAATAATGGGAACCAAATTGATAGTAAGAAACTGTACCAGCTTGATCTAGACAAAATCATCAGCGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTACACTTCGAAGATGCTGCTTGCTGCAATTGATGAGAATCACCGGGGTACTTATGACTTTCTCTACTTACCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTCATCAATATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCATTTAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCATCATTGGCATATGCACGGATACAAGGAAAGGCTGCGCTTGTAATGCATTTTCAGAATTCGAGCTTAATGAACGAGGATAAGAGGTGCCGGCCAATTCTCTTTCATTCAGAGGGCCAAGATACTGGTGACCAGAACTCAAATAATAAGTTGATTGAATGGTTTCCGAGATGGTATTGA 2520 0.4266 MDKHSGDSLPAHGVVGLSEISSLNIPKKVGSSAWGIPHATNVFHDSSDVSFFSSSLPVLPHEKLNLTDSEHHDQPVDDNLLTLDKVHKEDEGHDPFIDFETNAIGNMLPDDEDELLAGIMDDLDLSRLPSQLEDLDENDLFINGGGFEMDFEPQDSLSIGMSKISMSDLVASNGIGHYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNDAFSLVSLMQQLSQELEQDEARTFRHQVGSPLASSPPGNWAQFGSPVEHNPLGSFSKSPGLGHASPMNINHLSGLAAILSPHASTSTKIAPIGKDPGRAANQMFANSGSTQAAAFQHSMSFPEQKVNASPRPISTFGESNSSSSSIGTLSGPQFLWGSPTPYSEHSNTSAWSSSSVGLPFTSSSQRQGFPYTSHRGPFLGSQPHHHVGSAPSGLPLDRHFSYFPESPETSLVNPVAFGNLNHGDGNFMVNMGAHASLGVGVGLSGNTTEISSPSFRMMSLPRHGSLFLGNGSYSGPGATNIEGLADRGRGRRPDNNGNQIDSKKLYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTGDQNSNNKLIEWFPRWY 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi216g00004 839 CDD RRM1_MEI2_like 198 274 IPR034453 -
Gabi216g00004 839 CDD RRM3_MEI2_like 706 791 IPR034454 -
Gabi216g00004 839 MobiDBLite consensus disorder prediction 545 574 - -
Gabi216g00004 839 FunFam MEI2-like protein 5 isoform 2 188 282 - -
Gabi216g00004 839 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Gabi216g00004 839 Gene3D - 283 370 IPR012677 -
Gabi216g00004 839 SUPERFAMILY RNA-binding domain, RBD 705 790 IPR035979 GO:0003676
Gabi216g00004 839 Gene3D - 188 282 IPR012677 -
Gabi216g00004 839 PANTHER RNA RECOGNITION MOTIF-CONTAINING 99 821 - -
Gabi216g00004 839 MobiDBLite consensus disorder prediction 485 508 - -
Gabi216g00004 839 CDD RRM2_MEI2_like 283 353 - -
Gabi216g00004 839 FunFam Protein MEI2-like 1 283 385 - -
Gabi216g00004 839 SMART rrm1_1 285 353 IPR000504 GO:0003723
Gabi216g00004 839 SMART rrm1_1 200 268 IPR000504 GO:0003723
Gabi216g00004 839 SMART rrm1_1 705 781 IPR000504 GO:0003723
Gabi216g00004 839 Pfam RNA recognition motif 2 703 799 IPR007201 -
Gabi216g00004 839 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Gabi216g00004 839 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Gabi216g00004 839 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Gabi216g00004 839 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi216g00004 Gabi-Chr216 112654 121450 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi216g00004 194 434 Eukaryotic Initiation Factors Gene Family AT1G71770 25.564 1.76e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi216g00004 - - gmx:100812324 1456.04