Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi216g00003 ATGCAGCAAGATCATAAGAAAAAGAGTTCAACAGAGATGGATTTTTTCTCTGAATATGGTGATGCCAACCGGTACAAGATTCAAGAAGTCATTGGCAAAGGAAGTTATGGTGTTGTCTGTTCAGCCATTGACACTCATACTGGTGAAAAAGTGGCAATTAAGAAGATTCATGACATCTTTGAGCATATATCTGATGCTGCACGTATTCTCCGTGAGATAAAACTGCTGAGACTTCTACGACATCCTGATATTGTTGAAATAAAACACATTATGCTGCCTCCTTCTAGGAAGGACTTCAAAGATATTTATGTTGTTTTTGAGCTAATGGAGTCTGATCTTCATCAAGTCATTAAAGCCAATGATGACTTAACAAAAGAGCACTATCAGTTTTTTCTTTATCAATTACTTCGGGCACTGAAGTATATTCACACTGCAAATGTTTATCATCGAGATTTGAAGCCAAAAAATATACTGGCAAATGCAAACTGTAAACTTAAAATCTGTGATTTTGGGTTGGCTAGAGTTGCCTTCAGTGACACACCAACAACTATATTTTGGACGGATTATGTTGCTACAAGGTGGTATAGAGCTCCAGAGCTATGCGGATCATTTTACTCGAAGTATACACCAGCAATTGATATATGGAGTATAGGTTGCATCTTTGCTGAAGTACTAACAGGAAAGCCACTTTTTCCTGGAAAAAATGTAGTCCATCAGTTGGATCTGATGACAGATCTGCTTGGGACTCCCCCATTGGATACTATATCGCGGGTACGCAATGATAAGGCAAGGAGATATCTAACTAGCATGAGGAAAAAGCAACCGGTGTCATTTGCACATAAATTTCCCAATGCAGACCCTTTAGCACTGCGACTGCTCGAAAGGTTGCTGGCTTTTGACCCAAAAGACCGGCCTACTGCTGAAGAGGCATTGGCTGATCCTTACTTTAAGGGACTGGCAAAAGTTGAGAGGGAACCATCCTGCCAGCCTATCACAAAAATGGAGTTTGAATTTGAAAGACGTAGAGTCACAAAGGAAGAAATTCGAGAGCTAATTTTCCGTGAGATTCTAGAGTATCATCCTCAACTATTGAAAGACTACATGAATGGAACAGAGAGAACTAACTTTCTTTATCCAAGTGCTGTTGATCAATTCAGAAAACAGTTTGCTCATCTAGAGGAAAATGGTAAAAATGGTCCAGTTATGCCACTTGATAGAAAGCACGTTTCTCTTCCAAGGTCAACAGTTGTACATTCGAATACGGTACACCCGAAAGAGCAGACAAATATTGCTTCCAGCAAAAACCGTCAAACAAGCGATGAATACAGTAAGAACTCTAGAGACACACAAATTCCAGTGCCAAGGTCTTTGCAGGGGCCTCAAAGAATTCCGTTAGGTTTGTCAAAACCTGGTAAAGTTGTTGGGCCAGTTGTTCCATATGAGTATGGGGGTGTTGTCAAGGACTCTTATGATCAAAGGGCTTTTATCAGAGGTTCTGTGCTTCCTACTCAACCTGTTCCTCCAGCATATTATTATCAAAGATCTAGCACTGGAAGCCAAGAAAGGCCAGCAACAGAAGCTGATAAGGGTGCACCTTTGCAAGCAAAACATGCACAGCAATGTGGAGTTAATGCCAAAATAGCACCAGATATAGCTATTAATATTGATACAAACCCCTTTTTTATGACAAGGGCAGGAGTGAACAAATTAGAACAGGATGATCAAATAGCCATAGAAACAAACTTGCTGCAGTCAAAGGCGCAATATAGTGGAATTAGTGCTGCTGCTGGGGCCACTGCTCATAGGAAAGTTGGGCCTATTCAATATGGTATGACAAGAATGTACTAG 1848 0.4053 MQQDHKKKSSTEMDFFSEYGDANRYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSRKDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFYSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPPLDTISRVRNDKARRYLTSMRKKQPVSFAHKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEEIRELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFRKQFAHLEENGKNGPVMPLDRKHVSLPRSTVVHSNTVHPKEQTNIASSKNRQTSDEYSKNSRDTQIPVPRSLQGPQRIPLGLSKPGKVVGPVVPYEYGGVVKDSYDQRAFIRGSVLPTQPVPPAYYYQRSSTGSQERPATEADKGAPLQAKHAQQCGVNAKIAPDIAINIDTNPFFMTRAGVNKLEQDDQIAIETNLLQSKAQYSGISAAAGATAHRKVGPIQYGMTRMY 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi216g00003 615 MobiDBLite consensus disorder prediction 419 467 - -
Gabi216g00003 615 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi216g00003 615 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
Gabi216g00003 615 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi216g00003 615 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 372 - -
Gabi216g00003 615 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Gabi216g00003 615 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi216g00003 615 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Gabi216g00003 615 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Gabi216g00003 615 CDD STKc_TDY_MAPK 24 361 - -
Gabi216g00003 615 MobiDBLite consensus disorder prediction 419 456 - -
Gabi216g00003 615 FunFam Mitogen-activated protein kinase 111 339 - -
Gabi216g00003 615 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Gabi216g00003 615 FunFam Mitogen-activated protein kinase 15 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi216g00003 Gabi-Chr216 24267 38415 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi216g00003 1 435 MAP Kinase Gene Family AT2G42880 88.073 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Gabi216g00003 Pkinase 8.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi216g00003 - - gmx:100811788 1133.24