Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2166g00023 ATGACCTCTACTAATTCAGTTCTTTTCTCAATGGCTCTTTCTTCAACAAAAGAGTTATTATCTCCAACTTCCACCACCTCTTTCACATTCATCTTCTTCTCCGTCTTGTTTCTCAGCCTCTCTGCTGCTTCGCCCATTGACTACATCGTGGGATCAGAGTGTCTTAAGGTTTCTCCTTCTGCATTCGTTGGTTCAGTGAGAGCTGTTCTTGACGTTTTGCAAGATGTCACCGCCATTCTCTCTGAGTTCGGCACTGGCTTCGGCGATTTTCGTCTCTCTAACGCCGTTTCTGATTGCCTCGATTTGCTTGACCTCTCCTCTGATGAACTCGATTGGTCTGCTTCCGCTACCCAAACTCCCAAAGGGAAGCATAATAGTACTGGGAACCTAAGCTCTGATTTGAGGACATGGCTAAGTGCTGCACTTGCGAATCCAGAGACATGCATGGATGGATTCGAAGGTACAAGTGGGATTGTGAAGGGTCTAGTATCAACTGGCCTTGGCCAAATGATTTCATTGCTTCAGGAGTTACTTACCCAAGTGAACCCTGTTTCGGATCACTTCTCTTTCTCCACCAAGCAGGGTCATTTTCCTTCGTGGATTAAACCAAGGAACAGGAAGCTACTGCAAGAAAATGGGGTGCATGTGGATGCTGTTGTAGCCGCTGATGGGACTGGGAATTTTACTAAGGTGAGGGATGCTGTGTTAGCAGCACCTGACTATAGCATGAAACGCTATGTGATATACATAAAGAGGGGTGTTTACATGGAGAATGTTGAGATCAAGAAGAAGAAGTGGAACCTTATGATGATTGGAGATGGCATGGATGCCACTGTTATCTCCGGTAACCGGAGTTTCATCGACGGTTGGACCACATTCCGGTCAGCTACTTTTGCTGTGAGTGGGAGAGGATTCATAGCACGAGACATTACCTTCCAGAACACTGCTGGGCCCGAGAAGCATCAAGCAGTGGCACTAAGATCAGACTCTGACCTCTCTGTATTCTACCGATGTGGTATTTTTGGTTACCAAGATAGCCTCTATGCACACACCATGCGCCAATTCTATAGAGAATGCAAAATAAGTGGCACAGTGGATTTCATATTTGGAGATGCCACTGCTATTTTCCAAAACTGCCAAATACTTGCTAAGAAAGGGTTACCAAATCAAAAGAACACCATCACAGCTCAAGGGAGAAAAGACCCTGATGAACCAACTGGTTTCTCCATGCAATTCTGCAACATCTCTGCTGATTCTGACCTTGTTAACTCAGTTAACTCCACACAAACATACCTTGGCAGACCATGGAAGCCATATTCAAGAACAATTTTCATGCAATCTTACATAAGCAATGTGTTAAGGCCAGAAGGGTGGTTAGAGTGGAATGGGGACTTTGCTTTGGACACATTGTACTATGCAGAGTACATGAATTATGGGCCAGGAGCTGGACTAGTTAACCGGGTGAAATGGCCAGGGTTCCATGTGATGAATGATTCTAGGCAGGCTAGTAACTTCACTGTGTCCCAATTTATTGAGGGGAATCTTTGGTTACCTTCAACTGGTGTAACGTTCACTGCGGGGTTGAGTGTTTAA 1593 0.452 MTSTNSVLFSMALSSTKELLSPTSTTSFTFIFFSVLFLSLSAASPIDYIVGSECLKVSPSAFVGSVRAVLDVLQDVTAILSEFGTGFGDFRLSNAVSDCLDLLDLSSDELDWSASATQTPKGKHNSTGNLSSDLRTWLSAALANPETCMDGFEGTSGIVKGLVSTGLGQMISLLQELLTQVNPVSDHFSFSTKQGHFPSWIKPRNRKLLQENGVHVDAVVAADGTGNFTKVRDAVLAAPDYSMKRYVIYIKRGVYMENVEIKKKKWNLMMIGDGMDATVISGNRSFIDGWTTFRSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYAHTMRQFYRECKISGTVDFIFGDATAIFQNCQILAKKGLPNQKNTITAQGRKDPDEPTGFSMQFCNISADSDLVNSVNSTQTYLGRPWKPYSRTIFMQSYISNVLRPEGWLEWNGDFALDTLYYAEYMNYGPGAGLVNRVKWPGFHVMNDSRQASNFTVSQFIEGNLWLPSTGVTFTAGLSV 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2166g00023 530 SUPERFAMILY Pectin lyase-like 216 527 IPR011050 -
Gabi2166g00023 530 Gene3D - 215 530 IPR012334 -
Gabi2166g00023 530 PANTHER PECTINESTERASE 87 518 - -
Gabi2166g00023 530 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 182 IPR035513 -
Gabi2166g00023 530 Pfam Pectinesterase 217 514 IPR000070 GO:0030599|GO:0042545
Gabi2166g00023 530 Pfam Plant invertase/pectin methylesterase inhibitor 91 165 IPR006501 GO:0004857
Gabi2166g00023 530 CDD PMEI-like_4 27 185 - -
Gabi2166g00023 530 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
Gabi2166g00023 530 ProSitePatterns Pectinesterase signature 1. 242 261 IPR018040 -
Gabi2166g00023 530 SMART PMEI_2 44 180 IPR006501 GO:0004857
Gabi2166g00023 530 FunFam Pectinesterase 41 183 - -
Gabi2166g00023 530 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 65 169 IPR035513 -
Gabi2166g00023 530 FunFam Pectinesterase 211 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2166g00023 Gabi-Chr2166 266897 269630 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2166g00023 29 528 Carbohydrate Esterase AT3G43270 64.038 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2166g00023 K01051 - gmx:100801813 851.277