Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2166g00022 ATGGATGGATTCGAAGGCATCAGTGGCAATGTGAAGGGTCTAATATCCACTGGAATTTACAAAGTGAACTCCATGGTTGAGCAACTCCTCACTCAGGTGCACCCTTTTTCAGAACACTTCACCAGCCAGAGCCATTTTCCTTCTTGGGTTGAACCAATGGATCAGAAGCTGCTTCGGTCAAATGGGGTGCATGTGGATGCTATAGTAGCTTCTGATGGGACTGGGAATTTTACCAAGGTGATGGATGCTGTGTTAGCAGCACCTGATTATAGCATGAAACGTTATGTTATACACATAAAGAGTGGTGTTTACAACGAGAACGTTGAGATCCATAAGAAGAAGTGGAACCTCGTGGTAATTGGAGAGGGTATGGATGCTACTATTATCTCCGGTAACTTGAGTAACGGTACAAATGTTACCACATTCAAAACAGCTACCTTTGCTGCGAATGGAAGAGGGTTCATAGCACGAGACATTTCATTCAGGAACACGGCAGGGCCTAAAATGAAGCAAGCAGTAGCACTAAGATCAGACTCCGACCTCTCTGTATTCTACCGATGTGGTATTTTTGGTTACCAGGATAGTCTTTATGCACACGCCTTGCGCCAATTCTATAGAGAATGCAAAATCACTGGCACTGTTGATTTCATCTTTGGTCATGCCACTGCTGTGTTCCAAAACTGCCAAATATTGGTCAAGAAAGGCTTAAAAGATCAAAAGAACACCATCACAGCTCAAGGGAAAAAGTACCCAACACAATCATCTGGTTTCTCAATCCAATTCTGCAACATTTCAGCAGATTCTGACCTTGTACCCTTTGTTAATTCCACACAAACATACCTTGGCAGACCATGGAAACCATATTCTATAACAATTTTCATGCAATCCTACTTAAGTGATGTGTTAAGACCTGAAGGGTGGCTAGAGTGGAATGGTTCCTCACATTTGGACACATTATATTATGCTGAGTACAACAATTATGGACCAGGAGCTGGGCTAGATAAACGAGTGAAATGGCCAGGGTACCATGTGATTAATGATTCTACCCAAGCTAGTAACTTCACTGTGGCACAATTGATTGTGGGTGATCTTTGGTTGCCTTCAACTGGTGTAACGTTCACTCCTGGATTTGGGGATTAG 1140 0.4289 MDGFEGISGNVKGLISTGIYKVNSMVEQLLTQVHPFSEHFTSQSHFPSWVEPMDQKLLRSNGVHVDAIVASDGTGNFTKVMDAVLAAPDYSMKRYVIHIKSGVYNENVEIHKKKWNLVVIGEGMDATIISGNLSNGTNVTTFKTATFAANGRGFIARDISFRNTAGPKMKQAVALRSDSDLSVFYRCGIFGYQDSLYAHALRQFYRECKITGTVDFIFGHATAVFQNCQILVKKGLKDQKNTITAQGKKYPTQSSGFSIQFCNISADSDLVPFVNSTQTYLGRPWKPYSITIFMQSYLSDVLRPEGWLEWNGSSHLDTLYYAEYNNYGPGAGLDKRVKWPGYHVINDSTQASNFTVAQLIVGDLWLPSTGVTFTPGFGD 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2166g00022 379 ProSitePatterns Pectinesterase signature 1. 91 110 IPR018040 -
Gabi2166g00022 379 FunFam Pectinesterase 60 377 - -
Gabi2166g00022 379 ProSitePatterns Pectinesterase signature 2. 210 219 IPR033131 -
Gabi2166g00022 379 Gene3D - 61 377 IPR012334 -
Gabi2166g00022 379 PANTHER PECTINESTERASE 28 367 - -
Gabi2166g00022 379 Pfam Pectinesterase 66 363 IPR000070 GO:0030599|GO:0042545
Gabi2166g00022 379 SUPERFAMILY Pectin lyase-like 64 376 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2166g00022 Gabi-Chr2166 237754 269273 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2166g00022 1 377 Carbohydrate Esterase AT3G43270 61.990 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2166g00022 K01051 - gmx:100798620 586.26