Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2166g00019 ATGGCGGGTGCTCTAGTGGGTGGAGCTTTTCTCTCTGGTTTTATCAATGTTGTTTTCGACAGGCTCTCTTCCCCTGAGGTTGCTAACTTCATCCGAGGCAAGAAGCTTGACAGCAAGTTGATTCAAAGATTGGAGACCACCCTTTATGCGGTTCAGGCTGTGCTTAATGATGCTGAGCATAAACAATTCTATGATCCCGCTGTGAAGAAGTGGCTCGATGATCTCAAAGATGCTGTTTATGTGGCAGATGATTTGTTGGACCAAATTTCTACTGAAGCTGTCACTCAGAAGGAGGTGAGTAACTTTCTGTCTCGATTTCTCAATTTGAGAGATAGGAAAGTGGTAAGTGAGATTGAAGACATCACTAGCAGGCTAGAAAGTATCGTGAAATACAAAGATATTCTTGGCCTGAAAGAGATTCCCGGAGAGAACATGTCATGGAGAACTCCATCTACGTCTCTAGTAAAAGGGAATATATATGGCAGGGACAATGACCAAGATGCCATAATCAAAATATTAAATGACAATAGTGAAGAGAATTTATCTGTGATCCCTATTGTGGGCATGGGTGGCGTTGGAAAAACCACTTTAGCCCAATGGGTGTTCAATGATGAAAATTTGATGAAGGGGTTTGATTTAAAAGCATGGGTTTGTGTGTCTGAAGAATCTGATATTCTCAACATTACAAGGACTGTAATAGAAGAACTTACTCATGGTACTTGTAATGTGAAGAATTTCAATATACTTCAACTTGATTTGAAGGAAAAGCTGGCAAGAAAGAAATTCTTTATTGTTCTGGACGATGTTTGGAATATTGATCATCATGGTTGGGATAGTCTCAAAGCGCCTTTTCAATGTGGAATAACGGGAAGTAAAATCCTTGTAACAACACGTAGCGAGAAGGTTGCTTCAGTAGTCCAAACTCGTCCACCTTACAGTCTGCACGAGTTGTCTGATGAACATTGTTGGTCAGTGTTTGCAAAGAAGGCACATTTTCCAGAATCTAATGGTGATTCAACTCTAGAAAAAATTGGCAGAGAGATTGTTAAGAGGTGTAAGGGTTTACCTTTAGCTGCAGAAACCCTTGGTGGGCTCTTACAAACAAGACATGATATCAAGAACTGGAATTCTATATTGACAAGTGAGATTTGGGAATTTCCTACACAAGATAGTAAAATTATTCCAGCATTGAGAATAAGTTATTACCATCTGCCTCCACATTTAAAATGTTGTTTTGCTTATTGTTCATTGTATCCCAAGGATTATAGATTTGATAAAGATGCATTAATCTTATTATGGATGGCAGAAGATCTTTTACGGAGACCAAAGACAGGAGAGACACTAGAAGAAGTTGGTTCGGAGTGTTTTGATGATTTAGCTTCCAGGTCATTTTTCAAACTAATTGAACAGTATTTCGTGATGCACGACCTGATTCATGACTTAGCAATATCGGTTGCAGGGGACTTCTATTTTAGATCAGAAGAACTTGGGAAAGCAGACAATGTTAAAATTCAGACTCGTCATTTGTCATATGGAAGGCTGAGTCATCCTTTCCCAAAAAATTTTGTTGCCATTGATAAACTAAAATCTTTGAGGACTTTTCTGCCAATCAATTTCTCAACTCCTTCATTCAGCTATGAAAGTGCAGCATTCATCATATTATCAATGTTTAAGTATCTAAGAGTTTTGTCATTTTCTCAATTCAGGGAACTTGATGCATTGCCTGATTCTATAGGTGAATTGATCCATCTGCGTTACTTGGATCTCTCTTATACAGGTATCAAAACATTGCCAGGATCATTGAGTAACTTGCACAACCTACAGACATTGAAGCTGCGTCATTGTCCTCAGTTGATTATGCTGCCAAGTGACATGCAAAATCTTGTGAACTTGCGACATCTTGATATTAGAGGTACTGTTTTGAAAGACATGCCTCGAGGAATGAGCAAATTGAAACATTTGCAGCTCTTGAGTGATTTTGTTGTGGGGGAGCATGAAGAGAATGGGATAAAGGAATTGGGAGAACTTTCAAATCTTCATGGATCACTATGGATTAGCAAATTGGAGAATGTTACCAGTATTGGTGAAGCAAGGGAAGCAAGGATAATGGATAAGACCCACATTGAAAATTTGATCTTGGAGTGGTCTTCTGATGGTGATATGGTTACAATGTCAACGCACATCGAAAGAGAAATATTTGACAAGTTACAACCTCACAAAAACTTGAAAGTGCTCACGATTAAGAGGTACAGGGGTACCAGATTTCCAGATTGGGTAGGACATTCTTCCTACCACAATATGACTCATGTGAGACTTGAGTCTTGTAGCAATTGTTATATGCTCCCTTCGCTTGGACAATTACCCTCCCTGAAATCCTTGGTGATTGAAGATTTTAATGGGCTGGAAATTATTGGTGGCGAGTTTTACAAGAATGATAATGATGAATCTTGTTCAGCAACACCCTTTCCATCCTTGGAGACTCTTTCATTTTATAGAATGTCTAGTTGGGAGGTGTGGCGCTCACATGAGTGTAATGCTTTTCCTCAACTTAAAGAGCTTAGAATAAGTGATTGTAGCAGCTTCAGGGGAGATTTCCCTACTCACCTTCCTGCTTTGGAAACACTTGAGATTTATCGTTGCAATCAGCTTGTTTCTTCTCTCCCAAGGTCTCCAGCAATTTGCGAATTAACGATACATGAAAGCAATAAAGTAGGGTTGCAAGAGTTGCCGATTTCGCTACGATCCCTATCAATCACAGGATGCGAGTTGGTGGAGTCCGTGTTTGGAGCCATGGCCATCACCCAGCCAACTTGTCTTCATTCTTTGAGGATCTCAGATTGTCCATCTGCCTTATCATTTCTGGGGGATATTTTACCACAATGTTTGAAAGAACTATTCATCCGAAATTGTGAAAAGGTAGAATTACCAACGCAACACGAGTTACTTGAGACATTGATAATAGAAAACAGCTGTGATTCAGTTGTATGCTTCTCATTGGAGACCTTTCCTAATCTCAAGTTGCTGGAAATCAAAAAATTTGAAATTATGGAATCTCTTTCAGTGTCACAGTCACAGGTTAATGCTCTTAGCTTTCTCTACATTGATCAATGCCCCAATCTTGTATCTTTTCCCACAGAAGGATTTGCTGCGCCCAACATGACATCTTTCGGGCTAGGCCATTGCAACAAGTTGAAGTCGTTGCCTTGTCACATGAATACTCTTTTCCCAAAGTTAGAATATCTGAGAATAAGTAATTGCCCAGAAATTGATTCGTTTCCACAAGGGGGTCTGCCGCCTAACTTGACAAGCCTTGAGATCTGGGATTGCGAGAAATTATTGAGCGGCCTATCATCTATGGGCATGCATCAGGGTCTCACTCATCTAGACATTGCATGTGAGAGTGTAAAGTCATTCCCGAAGGAGGGTTTGATGCCTCAGCTTCCCTCCCTTAACACTCTGTGGCTGTATAAATTTGAAAATATGGAGACGTTGAACTGCAAGGGGCTTCTCCACCTTACCTCTCTCCAAACATTAACAATTGAAGATTGTCCCAAGCTGCAGAATATGGCGGGAGAAAGGCTGCCTCCCTCTCTCATCAAACTCGAAATCTTTGCAAGTCCTTTGCTGGAAGAACGGTGCAATACAAAGCACCCGCTAATTTGGCCCATAATTTCCCACATCCTAGGCATTCGAGTTGATGGCAAATGGGTTTCGTGA 3717 0.4038 MAGALVGGAFLSGFINVVFDRLSSPEVANFIRGKKLDSKLIQRLETTLYAVQAVLNDAEHKQFYDPAVKKWLDDLKDAVYVADDLLDQISTEAVTQKEVSNFLSRFLNLRDRKVVSEIEDITSRLESIVKYKDILGLKEIPGENMSWRTPSTSLVKGNIYGRDNDQDAIIKILNDNSEENLSVIPIVGMGGVGKTTLAQWVFNDENLMKGFDLKAWVCVSEESDILNITRTVIEELTHGTCNVKNFNILQLDLKEKLARKKFFIVLDDVWNIDHHGWDSLKAPFQCGITGSKILVTTRSEKVASVVQTRPPYSLHELSDEHCWSVFAKKAHFPESNGDSTLEKIGREIVKRCKGLPLAAETLGGLLQTRHDIKNWNSILTSEIWEFPTQDSKIIPALRISYYHLPPHLKCCFAYCSLYPKDYRFDKDALILLWMAEDLLRRPKTGETLEEVGSECFDDLASRSFFKLIEQYFVMHDLIHDLAISVAGDFYFRSEELGKADNVKIQTRHLSYGRLSHPFPKNFVAIDKLKSLRTFLPINFSTPSFSYESAAFIILSMFKYLRVLSFSQFRELDALPDSIGELIHLRYLDLSYTGIKTLPGSLSNLHNLQTLKLRHCPQLIMLPSDMQNLVNLRHLDIRGTVLKDMPRGMSKLKHLQLLSDFVVGEHEENGIKELGELSNLHGSLWISKLENVTSIGEAREARIMDKTHIENLILEWSSDGDMVTMSTHIEREIFDKLQPHKNLKVLTIKRYRGTRFPDWVGHSSYHNMTHVRLESCSNCYMLPSLGQLPSLKSLVIEDFNGLEIIGGEFYKNDNDESCSATPFPSLETLSFYRMSSWEVWRSHECNAFPQLKELRISDCSSFRGDFPTHLPALETLEIYRCNQLVSSLPRSPAICELTIHESNKVGLQELPISLRSLSITGCELVESVFGAMAITQPTCLHSLRISDCPSALSFLGDILPQCLKELFIRNCEKVELPTQHELLETLIIENSCDSVVCFSLETFPNLKLLEIKKFEIMESLSVSQSQVNALSFLYIDQCPNLVSFPTEGFAAPNMTSFGLGHCNKLKSLPCHMNTLFPKLEYLRISNCPEIDSFPQGGLPPNLTSLEIWDCEKLLSGLSSMGMHQGLTHLDIACESVKSFPKEGLMPQLPSLNTLWLYKFENMETLNCKGLLHLTSLQTLTIEDCPKLQNMAGERLPPSLIKLEIFASPLLEERCNTKHPLIWPIISHILGIRVDGKWVS 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2166g00019 1238 Gene3D - 16 118 - -
Gabi2166g00019 1238 Pfam NB-ARC domain 164 380 IPR002182 GO:0043531
Gabi2166g00019 1238 FunFam Probable disease resistance protein At1g61300 144 310 - -
Gabi2166g00019 1238 SUPERFAMILY L domain-like 473 888 - -
Gabi2166g00019 1238 SUPERFAMILY L domain-like 900 1213 - -
Gabi2166g00019 1238 Gene3D - 316 399 IPR042197 -
Gabi2166g00019 1238 Gene3D - 400 484 IPR036388 -
Gabi2166g00019 1238 Pfam Rx N-terminal domain 10 98 IPR041118 -
Gabi2166g00019 1238 PANTHER DISEASE RESISTANCE PROTEIN RP 42 861 IPR044974 GO:0006952
Gabi2166g00019 1238 Pfam Leucine rich repeat 571 615 IPR001611 GO:0005515
Gabi2166g00019 1238 Gene3D Ribonuclease Inhibitor 957 1096 IPR032675 -
Gabi2166g00019 1238 PRINTS Disease resistance protein signature 256 270 - -
Gabi2166g00019 1238 PRINTS Disease resistance protein signature 183 198 - -
Gabi2166g00019 1238 PRINTS Disease resistance protein signature 352 366 - -
Gabi2166g00019 1238 PRINTS Disease resistance protein signature 602 618 - -
Gabi2166g00019 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 415 IPR027417 -
Gabi2166g00019 1238 Gene3D - 150 310 IPR027417 -
Gabi2166g00019 1238 Gene3D Ribonuclease Inhibitor 1112 1219 IPR032675 -
Gabi2166g00019 1238 Gene3D Ribonuclease Inhibitor 523 910 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2166g00019 Gabi-Chr2166 216565 222786 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2166g00019 180 658 WRKY Transcription Factor Family AT5G45050 22.222 1.51e-11 67.4