Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2166g00015 ATGGCTTCCTCATCTAATAAACTCTTCTTCCTTCTACTTACAATCTTCTTCTCAAATACTTGTGCTGTCCACTCTTCCAATACTTCCACAGAATTTCATGCCAAACTCTCTTCCTTAGGATCTTTCTGCAGAACTACCCCATACCCAGAAGTTTGCTATAATTCATTGAAGCTGTCCATCTCAATAAATATAAGTCCAAACATCATCACCTATCTCCTTCAGTCCCTCCAAGTAGCAATATCTGAAGCCACAAAGCTTTCTATTCTATTCCAAAATGTTGGACAATCAAACATCATAGAGAAGCAAAGAGGAGCAGTTCAAGACTGTAGAGAACTCCACCAATCCACCTTGGCTTCTTTAAAAAGATCATTATCTACAATTCGTTCCCAAAACTCAAGGAACTTAGTTGATGCAAGAGCCTACCTCAGTGCAGCACTCACAAACAAGAACACGTGTCTAGAAGGCCTAGATTCTGCTTCTGGTACCCTGAAGCCAGTTCTGGTAAATTCTGTGATTAACACTTACAAGCATGTTAGTAATTCTCTTTCAGTGCTCTCTAAGCCAGGGGTTAAGGTTCCCAAAGGCCACAAGAACCGGCGTTTGATGAGTGCTCCAACTTGGTCTCCAAGCAGAGAACATGACCTCTTGCAAAGCTTAGATGGGGAAGAATATAATCCAAATGAAGTGCTTGTTGTGGCTGCTGATGGAACTGGGAACTTTAGCAGCATCACTGAAGCCATCAACTATGCTCCAAATAACAGCGTGGATAGGACAGTGATCTATGTCAAACGAGGGATTTACGAGGAATATGTTGAAATCCCAAGTTCTAAAACCAACATGGTTATGCTTGGAGATGGAAGTGATGTCACTGTCATAACCGGTAACAGAAGCGTCGTTGATGGCTGGACCACTTTCAGATCTGCAACTCTAGCCGTCTCTGGTGATGGCTTTCTGGCACGTGATATAGCATTTGTGAACAGTGCAGGACCAAAGAAGCATCAAGCAGTTGCCTTGAGGGTAAATGCAGACTTGACTGCATTTTACAGGTGTGCCATTTATGGTTACCAAGACACTCTTTATGTTCACTCCTTTAGACAATTCTATAGAGAGTGTGACATTTATGGAACCGTAGATTTCATATTTGGTAATGCAGCTGTGGTTCTACAAGAATGCAACATTGTATCAAGAATGCCATTACCTGGCCAATTCACTGTCATTACAGCACAATCAAGAGATAACCCAAATGAGGACACTGGTATCTCAATCCAAAATTGCTCAATTATAGCTACAAATGATTTATATTCCAACTCTAGCAGCTTCAAGAGCTACCTTGGGAGGCCATGGAGGGTGTATTCTCGCACTGTTTTCCTTGAGTCCTACATTGGTGACTTTATTGACCCAAAGGGTTGGACAAAGTGGTCTAATGATCAAGGATTGCACACTTTGTATTACGCAGAGTATGAGAATTATGGACCTGGTTCAAGGACTGATAATCGTGTAGAATGGCTTGGGTACCATTTAATGGATTACAATGATGCATATAACTTCTCAGTTTCAGAGTTCATTAGTGGAGATGCTTGGCTTGAGTCTACTTCATTTCCTTATGATGATGGGATTTGA 1620 0.4148 MASSSNKLFFLLLTIFFSNTCAVHSSNTSTEFHAKLSSLGSFCRTTPYPEVCYNSLKLSISINISPNIITYLLQSLQVAISEATKLSILFQNVGQSNIIEKQRGAVQDCRELHQSTLASLKRSLSTIRSQNSRNLVDARAYLSAALTNKNTCLEGLDSASGTLKPVLVNSVINTYKHVSNSLSVLSKPGVKVPKGHKNRRLMSAPTWSPSREHDLLQSLDGEEYNPNEVLVVAADGTGNFSSITEAINYAPNNSVDRTVIYVKRGIYEEYVEIPSSKTNMVMLGDGSDVTVITGNRSVVDGWTTFRSATLAVSGDGFLARDIAFVNSAGPKKHQAVALRVNADLTAFYRCAIYGYQDTLYVHSFRQFYRECDIYGTVDFIFGNAAVVLQECNIVSRMPLPGQFTVITAQSRDNPNEDTGISIQNCSIIATNDLYSNSSSFKSYLGRPWRVYSRTVFLESYIGDFIDPKGWTKWSNDQGLHTLYYAEYENYGPGSRTDNRVEWLGYHLMDYNDAYNFSVSEFISGDAWLESTSFPYDDGI 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2166g00015 539 SUPERFAMILY Pectin lyase-like 227 536 IPR011050 -
Gabi2166g00015 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 186 IPR035513 -
Gabi2166g00015 539 Pfam Plant invertase/pectin methylesterase inhibitor 40 183 IPR006501 GO:0004857
Gabi2166g00015 539 PANTHER PECTINESTERASE 20 529 - -
Gabi2166g00015 539 CDD PMEI-like_3 41 188 - -
Gabi2166g00015 539 Gene3D - 224 539 IPR012334 -
Gabi2166g00015 539 ProSitePatterns Pectinesterase signature 2. 373 382 IPR033131 -
Gabi2166g00015 539 NCBIfam pectinesterase inhibitor domain 8 186 IPR006501 GO:0004857
Gabi2166g00015 539 Pfam Pectinesterase 230 525 IPR000070 GO:0030599|GO:0042545
Gabi2166g00015 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 187 IPR035513 -
Gabi2166g00015 539 FunFam Pectinesterase 223 539 - -
Gabi2166g00015 539 FunFam Pectinesterase 35 187 - -
Gabi2166g00015 539 SMART PMEI_2 34 184 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2166g00015 Gabi-Chr2166 164235 166175 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2166g00015 20 539 Carbohydrate Esterase AT2G26440 63.962 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2166g00015 - - gmx:100776969 883.634