Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2166g00012 ATGGCATTTCAGGATTTTGATATCATATCAGAGCGACGAAAGAACGAGGAGAAGCTCAAGCTTAGGAAAAAGATTCTCATTGGTGTAGTTTCCACCATTCTCCTTGCATGTGTGGTTGCTGCTGCAGCATTTGTTGTTGTCAAAAGAACAGGCTCTCAACCCAAGGAATTGTCTCCCTCAGAAGCTACCAATCATGTTGATAGATATTCCAAGCTTGTGAAAATGATATGCAGCAATGCAGAATACAAGGAAAAATGTGAAAGCTCCCTTACCGAGGCATTGAAGAAGGACCCCAAGTTGACAGAACCAAAGGATCTTCTCAAGATTTCTATGATTCTTGCTGAGGCTGAGGTCAACAAGGCCTTCAACAAAACCGCAAAATTGAAGTTTGCAAATGAGGAGGAGAAAGGAGCATACGAAGATTGCAAGGAGTTGTTTAAGGATGCCAAGGACGAACTTGGATTCTCTATCACTGAAGCTGGTTCCAATGATCTGTCTAAACTTAAAGCTCCTGAAATTAACAATTGGCTCAGTGCAGTTATATCTTACCAACAAACATGCATTGATGGGTTCCCTGAAGGAAACATGAAGAATGAGTTTAAAAAGCTCTTCAATGAATCCAGGCAACTTGTTAGCAATTCCCTTGCAGTTGTGTCTCAGGTTTCTTCCTTATTCTCTTCATTCAATGTTGGTGCTCCTGGTGCTGCTCCTGTTATGGCCCCTGCTGGGGATAGCCCAGCTCCTGCTTGGGCTAGCCCTGCTCAGTTGTTAGGAGCAGAAGGTAAACCCACACCTAATGTCACTGTTGCCAAAGATGGCAGTGGAAACTTCAAAACCATCTCTGAAGCTTTGGCAGCCATCCCACAAACTTATGAAGGAAGGTACGTGGTTTATGTTAAAGAAGGAGTATACGATGAGACAGTGACCGTGACAAGGAAAATGGTAAATGTAACCATGTATGGTGATGGACAACAAAAGAGCATCGTCACTGGCAACAAAAACTTTGTAGATGGAGTGAGGACATTCCAAACTGCATCTTTTGTTGTACTTGGAGATGGATTCATAGGCAAGGATATGGGATACAGAAACACTGCTGGAGCAGAAAAGCATCAAGCCGTGGCTGCCAGAGTACAAGCAGATCAAGCAGTGTTTGTACAATGTGCTTTTGAAGGCTACCAAGACACACTATATGCTCAAACCCATAGACAATTCTACCGTGACTGTGTCATTGAAGGCACCATTGATTTCATCTTTGGTGATGCTTCTGCTGTCTTCCAGAACTGCATAATGGTTATAAGGAAACCATTGGACAACCAGCAGAACATTGTCACTGCTCAAGGCAGAATTGACAAGGCAGAAAACACTGGTTTTGTTCTTCAAAAGTGTGTTATTAAAGCTGCTGATGCACTTGTTCCTGTGCTTGGTAAGATCAAGAACTACCTTGGAAGGCCATGGAAGGAGTACTCAAGAACCATCATCATGGAATCTGAAATTGGGGACTTGATTCAACCTGATGGGTGGCTACCTTGGGAAGGTGACTTTGCACTCACCACATTGTACTATGGTGAGTACAACAACAATGGTGTTGGTGCTAACACTAATGCTAGGGTCAAGTGGCCTGGTCGCAAAGATATTAACAGAGAAGAGGCTAACACTTACACTGTGGAGTCTTTCTTGCAAGGGACATGGATCAATGGCACAGGTGTACCAGCTCAGTTGGGCTTGTACAATTAA 1734 0.4343 MAFQDFDIISERRKNEEKLKLRKKILIGVVSTILLACVVAAAAFVVVKRTGSQPKELSPSEATNHVDRYSKLVKMICSNAEYKEKCESSLTEALKKDPKLTEPKDLLKISMILAEAEVNKAFNKTAKLKFANEEEKGAYEDCKELFKDAKDELGFSITEAGSNDLSKLKAPEINNWLSAVISYQQTCIDGFPEGNMKNEFKKLFNESRQLVSNSLAVVSQVSSLFSSFNVGAPGAAPVMAPAGDSPAPAWASPAQLLGAEGKPTPNVTVAKDGSGNFKTISEALAAIPQTYEGRYVVYVKEGVYDETVTVTRKMVNVTMYGDGQQKSIVTGNKNFVDGVRTFQTASFVVLGDGFIGKDMGYRNTAGAEKHQAVAARVQADQAVFVQCAFEGYQDTLYAQTHRQFYRDCVIEGTIDFIFGDASAVFQNCIMVIRKPLDNQQNIVTAQGRIDKAENTGFVLQKCVIKAADALVPVLGKIKNYLGRPWKEYSRTIIMESEIGDLIQPDGWLPWEGDFALTTLYYGEYNNNGVGANTNARVKWPGRKDINREEANTYTVESFLQGTWINGTGVPAQLGLYN 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2166g00012 577 Gene3D - 261 575 IPR012334 -
Gabi2166g00012 577 SUPERFAMILY Pectin lyase-like 264 570 IPR011050 -
Gabi2166g00012 577 FunFam Pectinesterase 260 575 - -
Gabi2166g00012 577 ProSitePatterns Pectinesterase signature 2. 410 419 IPR033131 -
Gabi2166g00012 577 PANTHER PECTINESTERASE 37 565 - -
Gabi2166g00012 577 NCBIfam pectinesterase inhibitor domain 62 221 IPR006501 GO:0004857
Gabi2166g00012 577 Coils Coil 132 152 - -
Gabi2166g00012 577 Pfam Plant invertase/pectin methylesterase inhibitor 72 216 IPR006501 GO:0004857
Gabi2166g00012 577 Gene3D Invertase/pectin methylesterase inhibitor family protein 69 222 IPR035513 -
Gabi2166g00012 577 Pfam Pectinesterase 266 561 IPR000070 GO:0030599|GO:0042545
Gabi2166g00012 577 CDD PMEI-like_3 76 223 - -
Gabi2166g00012 577 SMART PMEI_2 68 217 IPR006501 GO:0004857
Gabi2166g00012 577 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 221 IPR035513 -
Gabi2166g00012 577 FunFam Pectinesterase 69 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2166g00012 Gabi-Chr2166 137343 139827 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2166g00012 1 577 Carbohydrate Esterase AT2G26450 46.549 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2166g00012 - - gmx:100784679 715.301