Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2166g00005 ATGATGTTCCATTCTCAGGGTACATCAAGACATTGTAGTCTCCTTGCTGTCCTGAGTGGAAAATCATGTGACAAAAAGCAAAAGCAGAAGCAAGGTGACGATGCTTCTGAGGACCAATCCCCATACCCCTTTCCAGAGCTTTCTTCCTCTGGGCGTCTTGAGGTGAAAGTATTGACCAAACCTACGGCTGATGAACTCGGTCGCGTTCTTGAACAACTGCAGCCGGATTTTGTTTATCTGCAAGGGGAGCAGATAGAAGATAAGGGAGAAATTGGGTCTCTTGTATTGGAAGATTTTGACCTGTCTATCCCAGAAGCCTTATGTGGATTATTTTCTTCCAAATTACCTAATACTGTTTATTTGGAAACTCCTGGGGGAGAAAAATTGGCAGAGGCACTCCATTTTAAGGGAGTTCCATATACTATCTATTGGAAAAATGAGATTTCAAAGTACGCAGCTTCACATTTTCATCAAGCCTTTTTCTCAGTGGCACAGAGTACATCCAGCCATACATGGGATGCTTTCCAGCTTGCTCTTGCATCTTTTAGACTATACTGTGTACAAAACAATGTCTTACCTTCTAACAGCCAGAAGGGTGGTGATAAGCTTGGGCCACAAATTCTTGGGGACCCTCCCAACATTGATGTTAGTCCATGTGAAGCAGACATGAAGGAAGAGGAAAGTTCACCTGGGTCTATTTCTGCTGTAAAGATATATGATGATGATGTGAACATGAGATTTCTTGTTTGTGGAGTTCCCTGCACATTGGATGCTTGTTTATTGGGGTCATTAGAGGATGGACTCAGTGCGCTCCTATGCACAGAAATACGTGGATGTAAACTTAACAACCGGACAAGTGCTCCACCACCACCTCTCCAGGCCGGAACATTCTCACGTGGTGTGGTGACCATGCGTTGTGATATATCCACATGTAGTTCTGCTCATATATCACTTTTGGTGTCTGGTAGTGCAGATACTTGTTTTAATGATCAGCTTTTGGAGAATCATATTAAAAAGGAGCTCATTGAGAACAGTCAACTTGTCCAGGCATTTCCTAATCATGAACAAAGCAAATTACCTTCCACCGAACCACGAAGATCTGCCTCAGTAGCATGTGGATCTAGTGTGTTTGAAGTTTGTATGCGAGTTCCTACATGGGCTTCACAGGTTCTGAGGCAGCTTGCACCAAATGTATCATACCGCAGCCTAGTTATGTTGGGAGTTGCCAGTGTACAAGGATTACCAGTTGCATCTTTTAATAAAGATGATGCTGAACGTCTCCTTTTCTTTTGTAGTAGGCAGGAGAAAGAAAACTCTACTAACGATCCTGTTTTCTCTGGGTATCCTAGCTGGCTGATGCCTCCAGCACCTAGTCGAAAAAGATCCGAGCCATGCTCCAGAACTAAGTCTATTAATGCTAATGGTGTGGAAGTTGAAAATATTGGCAATAATAGACAGAAATTTAATATTGCTACTATGAGGCCAATCCCTCATGCTCATCGTCACAAGATTCTTCCTTTTTCTGGATTGTCTCAAGGTGAAAGATATGATGGAGAACATGGAAAATCAAATCAGCTACTTCCTCCTATTAAGCATAATGTTTTAGGCCCTAATTCAGTTACACATAAGAAATCTGTGTCAAACTCATTTCAAGCTCACCAGATTATTTCTTTGAATCCACTACCTATGAAAAAGCATGGTTGTGACAGAGCTCCAATACGAGTTTGCTCAGAGGAGGAATTCCTGAGGGATGTAATGCAGTTTCTGATCCTTCGAGGGCATACTCGTCTAATTCCGCAAGGTGGGCTTGCCGAGTTCCCTGATGCCATTCTAAATGCAAAACGCCTTGACCTTTTCAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGCTTTCATGTTGGGAATGGTATCAATTGGAAAGGACAAGTTTTCTCCAAGATGAGCAATCACACTCTGACAAATAGAATGACCGGTGTTGGCAATACACTCAAAAGACATTACGAAACTTATCTTTTAGAATATGAATTAGCTCACGATGACGTAGATGGAGAGTGCTGCTTATTGTGTCACAGTAGTGCAGCAGGTGACTGGGTGAACTGTGGTATATGTGGTGAGTGGGCTCACTTTGGCTGTGATAGGAGGCAGGGACTTGGAGCATTTAAGGACTATGCAAAAACTGATGGGCTGGAGTACGTTTGTCCTCACTGCAGCATATCAAATTTCAGTAAAAAATCCCATAAAACTGCAAATGGTTATTAA 2259 0.4245 MMFHSQGTSRHCSLLAVLSGKSCDKKQKQKQGDDASEDQSPYPFPELSSSGRLEVKVLTKPTADELGRVLEQLQPDFVYLQGEQIEDKGEIGSLVLEDFDLSIPEALCGLFSSKLPNTVYLETPGGEKLAEALHFKGVPYTIYWKNEISKYAASHFHQAFFSVAQSTSSHTWDAFQLALASFRLYCVQNNVLPSNSQKGGDKLGPQILGDPPNIDVSPCEADMKEEESSPGSISAVKIYDDDVNMRFLVCGVPCTLDACLLGSLEDGLSALLCTEIRGCKLNNRTSAPPPPLQAGTFSRGVVTMRCDISTCSSAHISLLVSGSADTCFNDQLLENHIKKELIENSQLVQAFPNHEQSKLPSTEPRRSASVACGSSVFEVCMRVPTWASQVLRQLAPNVSYRSLVMLGVASVQGLPVASFNKDDAERLLFFCSRQEKENSTNDPVFSGYPSWLMPPAPSRKRSEPCSRTKSINANGVEVENIGNNRQKFNIATMRPIPHAHRHKILPFSGLSQGERYDGEHGKSNQLLPPIKHNVLGPNSVTHKKSVSNSFQAHQIISLNPLPMKKHGCDRAPIRVCSEEEFLRDVMQFLILRGHTRLIPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMSNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISNFSKKSHKTANGY 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2166g00005 752 ProSiteProfiles ARID domain profile. 575 679 IPR001606 GO:0003677
Gabi2166g00005 752 Coils Coil 752 752 - -
Gabi2166g00005 752 Gene3D - 573 678 IPR036431 GO:0003677
Gabi2166g00005 752 Pfam ARID/BRIGHT DNA binding domain 578 675 IPR001606 GO:0003677
Gabi2166g00005 752 SUPERFAMILY ARID-like 576 690 IPR036431 GO:0003677
Gabi2166g00005 752 CDD PHD_ARID4_like 685 736 - -
Gabi2166g00005 752 MobiDBLite consensus disorder prediction 26 48 - -
Gabi2166g00005 752 CDD ARID 577 675 - -
Gabi2166g00005 752 SMART ARID_2 572 675 - -
Gabi2166g00005 752 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 679 742 IPR013083 -
Gabi2166g00005 752 SUPERFAMILY FYVE/PHD zinc finger 678 742 IPR011011 -
Gabi2166g00005 752 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 752 IPR042293 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2166g00005 Gabi-Chr2166 36023 44804 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2166g00005 2 751 ARID Transcription Factor Family AT3G43240 66.446 0.0 1005
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gabi2166g00005 ARID 9.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2166g00005 - - gmx:100808357 1334.7