Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2166g00004 ATGTTGAATTCTGAATCACCATCTCAGATGAGTGTAGACACAGTTCTCAAAATCGGAACAGGATCGACCAAGAAGCACAGGATCAGTGTTCCCATTCCCTCTTCCATGGAGGTGGTGGATCTCGAAGCCTTTTGCTTCTCCCACCAGGGCACCAAAATCTCCACCGCCATCTCCGTCGACCGCGCCTCCTCTCTTGCCGCTCCGGTTATCATCGATCTTTCCGACACTGAAGATGACGATGACGTTAGGATCCTCAATTTCAAGCCACAAAACACCCCTTTTGGAAAAAGAAGAAGAAACGCCATCGACATTAACTCCTGTGCTGCTGAAAAGGGAGAGTGTTCAAAAAGCGCACCATTTGTTTGTGAAATTTGCACAGAGACCAAAACCGTGAAGGACTCTTTCTCTATCAGTGGTTGCACCCACGCTTACTGCACGGAGTGCGTGGTGATGTATGTGGATTCCAAGCTTCAAGAAAACGTGATCAATATTCGGTGCCCTGTGTCTGGATGCAGAGGATTATTGGAGGCTGAGGATTGCCGTGAGATTCTTTCTCCTCAAGTGTTTGATAGGTGGGGCAAGGCACTGTGTGAGGCTTTAATCACTGCGGATGAGAAGTTTTATTGTCCCTATGGGGATTGCTCTGCACTGTTGATTCATGATGGCCAAGATGCAATAAAGGAATCTGAGTGTCCCAATTGTCATAGGATGTTGTGTGCAATGTGCAAGGCCCCTTGGCATCAGGGTATCGAGTGTGAGGAGTTTCAGAAGCTGAACAAGGACGAGAGGGAGAAGGAAGACATCATGTTGCTGCAGCTTGCAAAGGAAATGAAGTGGAGGAGGTGCCCCATTTGCAGGTTTTACGTTGCCAAATCTGATGGCTGCATGTATATGAAATGCAGGTGTGGAAATGCCTTCTGTTACAACTGTGGAGCTCGTTCCTTAGATCACACCCATTATTGTCGCAGCTGTAGACGCTAA 981 0.4771 MLNSESPSQMSVDTVLKIGTGSTKKHRISVPIPSSMEVVDLEAFCFSHQGTKISTAISVDRASSLAAPVIIDLSDTEDDDDVRILNFKPQNTPFGKRRRNAIDINSCAAEKGECSKSAPFVCEICTETKTVKDSFSISGCTHAYCTECVVMYVDSKLQENVINIRCPVSGCRGLLEAEDCREILSPQVFDRWGKALCEALITADEKFYCPYGDCSALLIHDGQDAIKESECPNCHRMLCAMCKAPWHQGIECEEFQKLNKDEREKEDIMLLQLAKEMKWRRCPICRFYVAKSDGCMYMKCRCGNAFCYNCGARSLDHTHYCRSCRR 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2166g00004 326 SMART ibrneu5 190 252 IPR002867 GO:0008270
Gabi2166g00004 326 SMART ibrneu5 262 324 IPR002867 GO:0008270
Gabi2166g00004 326 SUPERFAMILY RING/U-box 263 325 - -
Gabi2166g00004 326 Pfam Zinc finger, C3HC4 type (RING finger) 122 167 IPR018957 GO:0046872
Gabi2166g00004 326 SMART ring_2 282 324 IPR001841 -
Gabi2166g00004 326 SMART ring_2 122 169 IPR001841 -
Gabi2166g00004 326 Pfam IBR domain, a half RING-finger domain 194 252 IPR002867 GO:0008270
Gabi2166g00004 326 Pfam IBR domain, a half RING-finger domain 272 319 IPR002867 GO:0008270
Gabi2166g00004 326 SUPERFAMILY RING/U-box 196 257 - -
Gabi2166g00004 326 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 81 323 IPR031127 GO:0004842|GO:0016567
Gabi2166g00004 326 CDD BRcat_RBR_unk 203 255 - -
Gabi2166g00004 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 203 IPR013083 -
Gabi2166g00004 326 Gene3D - 249 326 - -
Gabi2166g00004 326 ProSiteProfiles TRIAD supradomain profile. 118 326 IPR044066 -
Gabi2166g00004 326 CDD Rcat_RBR_unk 278 313 - -
Gabi2166g00004 326 ProSiteProfiles Zinc finger RING-type profile. 122 168 IPR001841 -
Gabi2166g00004 326 ProSitePatterns Zinc finger RING-type signature. 140 149 IPR017907 -
Gabi2166g00004 326 FunFam RBR-type E3 ubiquitin transferase 254 326 - -
Gabi2166g00004 326 FunFam RBR-type E3 ubiquitin transferase 117 203 - -
Gabi2166g00004 326 SUPERFAMILY RING/U-box 118 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2166g00004 Gabi-Chr2166 17524 20775 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2166g00004 122 312 C3H Transcription Factor Family AT2G19610 30.198 1.54e-19 87.0