Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2166g00003 ATGAGTGTAGACACAGTTCTCAAAATCGGAACAGGATCGACCAAGAAGCACAGGATCAGTGTTCCCATTCCCTCTTCCATGGAGGTGGTGGATCTCGAAGCCTTTTGCTTCTCCCACCAGGGCACCAAAATCTCCACCGCCATCTCCGTCGACCGCGCCTCCTCTCTTGCCGCTCCGGTTATCATCGATCTTTCCGACACTGAAGATGACGATGACGTTAGGATCCTCAATTTCAAGCCACAAAACACCCCTTTTGGAAAAAGAAGAAGAAACGCCATCGACATTAACTCCTGTGCTGCTGAAAAGGGAGAGTGTTCAAAAAGCGCACCATTTGTTTGTGAAATTTGCACAGAGACCAAAACCGTGAAGGACTCTTTCTCTATCAGTGGTTGCACCCACGCTTACTGCACGGAGTGCGTGGTGATGTATGTGGATTCCAAGCTTCAAGAAAACGTGATCAATATTCGGTGCCCTGTGTCTGGATGCAGAGGATTATTGGAGGCTGAGGATTGCCGTGAGATTCTTTCTCCTCAAGTGTTTGATAGGTGGGGCAAGGCACTGTGTGAGGCTTTAATCACTGCGGATGAGAAGTTTTATTGTCCCTATGGGGATTGCTCTGCACTGTTGATTCATGATGGCCAAGATGCAATAAAGGAATCTGAGTGTCCCAATTGTCATAGGATGTTGTGTGCAATGTGCAAGGCCCCTTGGCATCAGGGTATCGAGTGTGAGGAGTTTCAGAAGCTGAACAAGGACGAGAGGGAGAAGGAAGACATCATGTTGCTGCAGCTTGCAAAGGAAATGAAGTGGAGGAGGTGCCCCATTTGCAGGTTTTACGTTGCCAAATCTGATGGCTGCATGTATATGAAATGCAGGTGTGGAAATGCCTTCTGTTACAACTGTGGAGCTCGTTCCTTAGATCACACCCATTATTGTCGCAGCTGTAGACGCTAA 954 0.4801 MSVDTVLKIGTGSTKKHRISVPIPSSMEVVDLEAFCFSHQGTKISTAISVDRASSLAAPVIIDLSDTEDDDDVRILNFKPQNTPFGKRRRNAIDINSCAAEKGECSKSAPFVCEICTETKTVKDSFSISGCTHAYCTECVVMYVDSKLQENVINIRCPVSGCRGLLEAEDCREILSPQVFDRWGKALCEALITADEKFYCPYGDCSALLIHDGQDAIKESECPNCHRMLCAMCKAPWHQGIECEEFQKLNKDEREKEDIMLLQLAKEMKWRRCPICRFYVAKSDGCMYMKCRCGNAFCYNCGARSLDHTHYCRSCRR 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2166g00003 317 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 79 314 IPR031127 GO:0004842|GO:0016567
Gabi2166g00003 317 FunFam RBR-type E3 ubiquitin transferase 108 194 - -
Gabi2166g00003 317 CDD BRcat_RBR_unk 194 246 - -
Gabi2166g00003 317 ProSitePatterns Zinc finger RING-type signature. 131 140 IPR017907 -
Gabi2166g00003 317 Pfam Zinc finger, C3HC4 type (RING finger) 113 158 IPR018957 GO:0046872
Gabi2166g00003 317 CDD Rcat_RBR_unk 269 304 - -
Gabi2166g00003 317 Gene3D - 240 317 - -
Gabi2166g00003 317 FunFam RBR-type E3 ubiquitin transferase 245 317 - -
Gabi2166g00003 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 196 IPR013083 -
Gabi2166g00003 317 SMART ring_2 273 315 IPR001841 -
Gabi2166g00003 317 SMART ring_2 113 160 IPR001841 -
Gabi2166g00003 317 SUPERFAMILY RING/U-box 109 191 - -
Gabi2166g00003 317 ProSiteProfiles Zinc finger RING-type profile. 113 159 IPR001841 -
Gabi2166g00003 317 SMART ibrneu5 181 243 IPR002867 GO:0008270
Gabi2166g00003 317 SMART ibrneu5 253 315 IPR002867 GO:0008270
Gabi2166g00003 317 SUPERFAMILY RING/U-box 187 248 - -
Gabi2166g00003 317 ProSiteProfiles TRIAD supradomain profile. 109 317 IPR044066 -
Gabi2166g00003 317 SUPERFAMILY RING/U-box 254 316 - -
Gabi2166g00003 317 Pfam IBR domain, a half RING-finger domain 185 243 IPR002867 GO:0008270
Gabi2166g00003 317 Pfam IBR domain, a half RING-finger domain 263 310 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2166g00003 Gabi-Chr2166 17500 20775 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2166g00003 113 303 C3H Transcription Factor Family AT2G19610 30.198 1.75e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2166g00003 K11975 - gmx:100803898 416.001