Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2166g00002 ATGGGCAACAAGTTTTGCAAGCCTTGTTTCCCAGCAAAAAGTAAAAGGGTTAGAAAGACAACAAACTCATCTGCTACTTTGCCTTCCATCACTGACCTGAGCCTAGAAAACTTCTTGGAGGCCAATGCTAATCCTCTTCCCATAAACGACAATATCCCACCTTTTATATGCCAAATTTGCTTTGAATCAAAGCCTCTAAACGACTCATTCAATGTGGAGGGTTGCACCCACTTTTACTGCACCAGATGCACTGTCAAATACATAGTGTCAAAGCTTCAAGACAACATAGTAAACCTTGTGTGCCCTGAGTCAGGGTGTTGTGGGGTCTTGAATCCTTATTACTGTAAGCCAATTCTACCAAACAATGTGTTAGAGTGGTGGGAGAAGGCTTTAACTGAATCTATGATTCCTGAGAAGGCTAAGTTCTATTGTCCATTTAATGATTGCTCAGCACTTTTATTCAATGACTGTCTTAAAGGAGTGGTCATAAGAGACACAACATGTCCTCATTGCAAGAGAAGCGTTTGTGTTCAGTGTAAGGCTCCTTGGCATCCTGAGTTGAGTTGTGAAAAGTTCCAGAGAATGAAGGACCGGAATGACGATTTGCTGCGGGATCTCGCTAAGAGAAGAAACTGGAGAAGGTGCCCAAACTGTAAGCATTATGTTGAAAAAGACTATGGGTGCAATGAGATGAAATGCAGGTTGGTTTTCCTTCTCTGCTTGTTCTCCTCGTACACAATGTTTTTTAATTTTTGGAAATATCTTTAA 768 0.4115 MGNKFCKPCFPAKSKRVRKTTNSSATLPSITDLSLENFLEANANPLPINDNIPPFICQICFESKPLNDSFNVEGCTHFYCTRCTVKYIVSKLQDNIVNLVCPESGCCGVLNPYYCKPILPNNVLEWWEKALTESMIPEKAKFYCPFNDCSALLFNDCLKGVVIRDTTCPHCKRSVCVQCKAPWHPELSCEKFQRMKDRNDDLLRDLAKRRNWRRCPNCKHYVEKDYGCNEMKCRLVFLLCLFSSYTMFFNFWKYL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2166g00002 255 SMART ibrneu5 125 189 IPR002867 GO:0008270
Gabi2166g00002 255 SUPERFAMILY RING/U-box 54 137 - -
Gabi2166g00002 255 Gene3D - 187 240 - -
Gabi2166g00002 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 138 IPR013083 -
Gabi2166g00002 255 SUPERFAMILY RING/U-box 133 194 - -
Gabi2166g00002 255 ProSiteProfiles TRIAD supradomain profile. 53 255 IPR044066 -
Gabi2166g00002 255 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 244 IPR031127 GO:0004842|GO:0016567
Gabi2166g00002 255 SUPERFAMILY RING/U-box 198 233 - -
Gabi2166g00002 255 ProSiteProfiles Zinc finger RING-type profile. 57 102 IPR001841 -
Gabi2166g00002 255 FunFam RBR-type E3 ubiquitin transferase 53 138 - -
Gabi2166g00002 255 Pfam IBR domain, a half RING-finger domain 128 189 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2166g00002 Gabi-Chr2166 11646 12413 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2166g00002 57 234 C3H Transcription Factor Family AT2G19610 27.128 1.29e-18 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2166g00002 K11975 - rcu:8259039 253.832