Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2164g00001 ATGGATAGTTACTACAATCACCACTTTGATAACACTCACAACAATGATGCACATTTACCTCCTGGCTTTCGCTTCCACCCCACTGATGAAGAGCTTATCACATACTACCTCCTCAAGAAGGTTCTAGATAGCACCTTCACTGGTAGAGCCATAGCTGAAGTTGATCTTAACAAATGTGAACCGTGGGAGCTTCCTGAAAAAGCAAAGATGGGTGAGAAGGAATGGTACTTCTTTAGCCTACGTGACAGAAAGTACCCAACTGGGTTACGTACTAATAGGGCCACAGAGGCTGGTTATTGGAAAGCCACAGGGAAAGACAGAGAGATTTATAGCTCAAAAACTTGTTCACTTGTAGGAATGAAGAAAACCTTGGTTTTCTATAGAGGAAGAGCTCCTAGGGGTGAGAAGAGCAATTGGGTCATGCATGAGTATCGCCTTGAAGGCAAATTTGCTTACCATTACCTCTCTAAAAGCTCCAAGGATGAGTGGGTCATATCGCGTGTGTTTCAGAAGAGTACCACAGGTGGTGGCTCCACCGTGTCTGCCACCATTAGTGGCTCAAAGAAAGTGCAAAGAATAACGAGCAACTCATCTGCTAACATGAGCCTCTGCCCTGAACCCGGTTCACCATCTTCCATTTACCTTCCACCGCTTCTTGACTCTTCCCCCTACACCACCACCAGCACCGCTGCCTCCGCCTTCAACGACCGTGAAAGCTGCTCCTTCGACAACACCACCGCACAAAGGGAGCACGTGTCCTGTTTCTCCACAATATCTTCCGCCGCCGCCAATGCAAGCTTTGACCTTGTTCCGCCACCTCTTACTATGGACCCTTTTTCTCGGTTCCAGAGGAACGTTGGTGTCTCTGTCTTCCCAAGCCTGAGGTCATTGCAAGACAACCTTCAGCTACCGTTCTTTTTCTCCCCGGCTGCGCCGCCCTTCCACGGAGGTGACATGGCAGGTTGTGGCGCCGTCGGGAACTGGCCGGTGCCGGAGGAGCAGAGGGTGGCTGAGGGTAGTTCCACCATGCCATTGGGACCATCTGAGTTTGATTGCATGTGGGGCTATTGA 1071 0.5005 MDSYYNHHFDNTHNNDAHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPRGEKSNWVMHEYRLEGKFAYHYLSKSSKDEWVISRVFQKSTTGGGSTVSATISGSKKVQRITSNSSANMSLCPEPGSPSSIYLPPLLDSSPYTTTSTAASAFNDRESCSFDNTTAQREHVSCFSTISSAAANASFDLVPPPLTMDPFSRFQRNVGVSVFPSLRSLQDNLQLPFFFSPAAPPFHGGDMAGCGAVGNWPVPEEQRVAEGSSTMPLGPSEFDCMWGY 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2164g00001 356 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 236 - -
Gabi2164g00001 356 Gene3D NAC domain 28 175 IPR036093 GO:0003677|GO:0006355
Gabi2164g00001 356 FunFam NAC domain-containing protein 100-like 28 175 - -
Gabi2164g00001 356 SUPERFAMILY NAC domain 14 171 IPR036093 GO:0003677|GO:0006355
Gabi2164g00001 356 ProSiteProfiles NAC domain profile. 19 171 IPR003441 GO:0003677|GO:0006355
Gabi2164g00001 356 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2164g00001 Gabi-Chr2164 34945 36575 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2164g00001 1 356 NAC Transcription Factor Family AT5G53950 54.639 3.53e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi2164g00001 NAM 7.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2164g00001 - - gmx:100788671 542.732