Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2161g00014 ATGGGATTCCCGGTAGGGTACCCGGAGGTTTTGGTCCCAAACCTGTTCCTCCACTTTCTAACCCTTCTCGGCTCTCTCCGTTCCCTTGTTTTCTCCCTCCTCCACCTCCTCCGCCTCTCCGATTTCCTCGACGCCTACGACGCAGCCGTCTCCTCGCCGGAGTCTCGGCCGGTCAGGCCCCAGGGCCCGACCCTGTCGGCGCTCCTGATCAGGGAATTCCTCCCGGTCGTCAGTTTCCTCGACCTCGCCGGAAAATCGCCGGCGGTGGTGGCGGAGAATGGCGGCTGCTGCGCAGTGTGCCTGAGCGAGTTTTCCGGGGAGGAAGAAATCAGGTGCATGGCGAACTGTAAGCACATTTTCCACCGGGTGTGTGTGGACCGTTGGATTGATCACGATCAGAAGACGTGTCCTCTTTGTAGGACCCACTTCGTACCTCATCATAAGATGGCGTCCTATTATCAACGGCTATGGACTGCATCTGGTGTTTCTGAGTTTAATCAAGATGACTTCACTGTATCCCCCTGA 525 0.5733 MGFPVGYPEVLVPNLFLHFLTLLGSLRSLVFSLLHLLRLSDFLDAYDAAVSSPESRPVRPQGPTLSALLIREFLPVVSFLDLAGKSPAVVAENGGCCAVCLSEFSGEEEIRCMANCKHIFHRVCVDRWIDHDQKTCPLCRTHFVPHHKMASYYQRLWTASGVSEFNQDDFTVSP 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2161g00014 174 ProSiteProfiles Zinc finger RING-type profile. 97 140 IPR001841 -
Gabi2161g00014 174 Pfam Ring finger domain 97 140 IPR001841 -
Gabi2161g00014 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 145 IPR013083 -
Gabi2161g00014 174 SUPERFAMILY RING/U-box 91 147 - -
Gabi2161g00014 174 PANTHER RING ZINC FINGER PROTEIN-RELATED 24 159 - -
Gabi2161g00014 174 SMART ring_2 97 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2161g00014 Gabi-Chr2161 239747 240810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2161g00014 1 162 C3H Transcription Factor Family AT1G63840 42.945 9.31e-45 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2161g00014 K16281 - gmx:100813224 207.994