Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2161g00005 ATGGCGATGGAAGGAGATGCAGATAAGGAACGGAACGAGTCAGGCGAGTCAACACGGTCGGAGGAGGTTGAGGAGATCCAGCGAGTTATTGAATCGGTGGTTCAAATCGGTGAATACAGAAGAACGCAGAGGAAGGAATGTCACAACTTGGTACGTCGTTTCAAGCTTATGTTGCCGCTTATGGAAGACCTTCGTGGCCTTCAACAACCCATTCATGAGAATGGTCTTGTTTGGTTAAGGAACCTCAACGACGCGCTTTTGTGTGCCAAGGACTTGTTGACAAATTGCAGCCAAGGAAGCAAGATTCACCTCGCATTGGAGAACGAGGGGGTTATGATCAAGTTTCAGAATGTCTATGAAAAATTAAGCCAAGCGTTTGATGATTTGCCTTGCGAGGAATTGGGGATTTCTGATGAAGTCAGAGAACAGATTGAGCTAATGCACGTGCAACTCAGGCGAGCCAGGAGAAGGACTGATACACAGGACATAGAACTTGCAATGGATATGATGGTAGTTTTTTCTGATGAGGATGATCGCAATTCTGATAGTGCTATCATTGAAAGACTTGCAAAAAAGATGGATCTTCATAGTGTTGAGGATCTTGAGGTAGAAACAATGGCTGTTAGGAACCTGGCTACAGAAAGAAAAGGGCAACAAGCTGAGAGTAACCAGAGAATAATTGACCTTCTTAACAAATTCAAACGAATTGTTGGCATGGAAGAAACCAATGTCCTTGATGATCCTGTCATTCCCAAGATGCTTGAGAGGTCCACATCTTTGGTCATCCCTCATGAGTTTCTCTGCCCAATAACTCTAGAAATCATGACAGATCCTGTTATTGTTGCAAGTGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCAAATCCAGTCATAACACATGCCCAAAAACGAGGCAACCTCTGGCTCACCTTTCATTGGCACCAAACTGTGCATTAAGAAACTTGATTGTGGAGTGGTGTGAGAACAATAACTTCAAACTTCCTAAAAAATATACTTCTTTTGATCAAGAAAGCTGTCCCATGGAGAACAAAGAGGAAATTCCATCTTTGGTAGAGAGCCTATCATCTATTCATTTAGAAGAGCAGAGAATGGCAGTGGAGAAGATACGTATGATATCAAAGGAAAATCCTGATAACAGAGTTTTGGTTGCTGAGCATGGAGGAATACCACCATTAGTACACCTATTGTCATATCCTGACTCAAAAATACAGGAGCATGCAGTGACAGCACTTTTAAATTTATCAATTGATGAAGGTAACAAGAAACTCATATCTAAAGAAAATGCTATACCAGCTATTATAGAAGTATTGGAGAATGGGAGTGTTGTGGCTAAAGAAAATTCTGCAGCAGCTTTATTTAGCTTGTCAATGCTTGATGAGAATAAAGAGATTGTGGGTCTATCAAATGGGATTCCCCCTTTGGTAGAGTTATTACAGAATGGAACAGTTAGAGGGAAGAAAGATGCTGCTACAGCTCTCTTTAACTTATCACTTAGTCATGCAAATAAAGGTAGGGCCATTAGTGCTGGCATTGTGACACCTTTACTTGAATTGCTCAAGCACATAAACTTGGGTATGATTGATGAAGCACTCTCCATTTTATTACTCCTTGTATCAAATTCAGAAGGAAGGCAAGAGATTGGACAGCTCTCATTCATTGAAACCCTTGTTGGGTTCATAAGAGATGGAACCCCTAAGAACAAGGAATGTGCAGCATCTGTTCTTCTTGAGTTATGTTCAAGTAACTCATCTTTTATATTGGCAGCACTTCAGTTTGGAGTGTATGAGCATTTAATTGAGCTTAAAGAAAATGGAACTAATAGAGCACAGAGGAAAGCAAATGCAGTCTTAGATCTCATCAGCAGGAGTGAGCAGATTTAA 1908 0.4093 MAMEGDADKERNESGESTRSEEVEEIQRVIESVVQIGEYRRTQRKECHNLVRRFKLMLPLMEDLRGLQQPIHENGLVWLRNLNDALLCAKDLLTNCSQGSKIHLALENEGVMIKFQNVYEKLSQAFDDLPCEELGISDEVREQIELMHVQLRRARRRTDTQDIELAMDMMVVFSDEDDRNSDSAIIERLAKKMDLHSVEDLEVETMAVRNLATERKGQQAESNQRIIDLLNKFKRIVGMEETNVLDDPVIPKMLERSTSLVIPHEFLCPITLEIMTDPVIVASGQTYERESIEKWFKSSHNTCPKTRQPLAHLSLAPNCALRNLIVEWCENNNFKLPKKYTSFDQESCPMENKEEIPSLVESLSSIHLEEQRMAVEKIRMISKENPDNRVLVAEHGGIPPLVHLLSYPDSKIQEHAVTALLNLSIDEGNKKLISKENAIPAIIEVLENGSVVAKENSAAALFSLSMLDENKEIVGLSNGIPPLVELLQNGTVRGKKDAATALFNLSLSHANKGRAISAGIVTPLLELLKHINLGMIDEALSILLLLVSNSEGRQEIGQLSFIETLVGFIRDGTPKNKECAASVLLELCSSNSSFILAALQFGVYEHLIELKENGTNRAQRKANAVLDLISRSEQI 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2161g00005 635 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Gabi2161g00005 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 478 520 IPR000225 GO:0005515
Gabi2161g00005 635 Coils Coil 137 157 - -
Gabi2161g00005 635 SUPERFAMILY ARM repeat 353 630 IPR016024 -
Gabi2161g00005 635 SMART arm_5 508 548 IPR000225 GO:0005515
Gabi2161g00005 635 SMART arm_5 426 466 IPR000225 GO:0005515
Gabi2161g00005 635 SMART arm_5 385 425 IPR000225 GO:0005515
Gabi2161g00005 635 SMART arm_5 467 507 IPR000225 GO:0005515
Gabi2161g00005 635 SMART arm_5 549 589 IPR000225 GO:0005515
Gabi2161g00005 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 335 IPR013083 -
Gabi2161g00005 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Gabi2161g00005 635 FunFam RING-type E3 ubiquitin transferase 340 635 - -
Gabi2161g00005 635 PANTHER U BOX DOMAIN-CONTAINING 44 629 - -
Gabi2161g00005 635 CDD RING-Ubox_PUB 263 315 IPR045210 -
Gabi2161g00005 635 FunFam RING-type E3 ubiquitin transferase 258 335 - -
Gabi2161g00005 635 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Gabi2161g00005 635 FunFam RING-type E3 ubiquitin transferase 19 132 - -
Gabi2161g00005 635 MobiDBLite consensus disorder prediction 1 23 - -
Gabi2161g00005 635 Pfam U-box domain 262 332 IPR003613 GO:0004842|GO:0016567
Gabi2161g00005 635 SUPERFAMILY RING/U-box 260 337 - -
Gabi2161g00005 635 Gene3D - 18 132 IPR036537 GO:0007166
Gabi2161g00005 635 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515
Gabi2161g00005 635 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515
Gabi2161g00005 635 Gene3D - 336 634 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2161g00005 Gabi-Chr2161 182163 185164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2161g00005 23 635 U-box Gene Family AT5G42340 64.111 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2161g00005 - - gmx:100777362 1017.3