Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2160g00010 ATGGAGGCTAAATTTGAGGGTAAGAATCAGTATTTTTATGGACCACTGTTGCCAGAGATGAAGGCTGTTGGGAAGAGAAGTTTGGAATGGGATTTGAATGATTGGAAATGGGATGGGGATCTTTTTACTGCTAGGCAATTGAATTCAGTCCCATCAGATTGTAGGAGTCGTCAACTGTTCCCAGTTGATCCTGAAACCCCTGCAAATGCTGATACTTCTAACAATTTGTCTTCTGGGTGGGAAGGAAATAGAGAATTGGAGAAGAGGAGGAGAGGTGTTATTGCTGAAGGGGTGCAGATGAATGATGAAAATGGTTCTCTTAATTTTAACCTTGGGGATCAAGCATACCCTATCATGGAAGGGGAGGAAAAGAGTGAAAAGAAGACTAAGATAACTGGGACTACTTCGAACCGTGCTGTTTGTCAGGTGGAAGATTGTAGGGCTGATCTTAGTAATGCAAAGGATTACCACCGTCGCCACAAAGTTTGTGATTTGCATTCTAAGGCTAGCAAGGCACTAGTGGGAAATGTTATGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTCTGGCAGGCCACAATAAGAGGAGGAGGAAAACCCATCCTGATGCTACTGTTGTTAATGGAGGCTCTCTGAACGAAGAAAGGGGAAGTAGCTATCTGTTAATGAGTCTTCTAAGGATACTTTCCAACATGCATTCAGATGGCTCAGATCATACAAGAAACCAGGACGTTCTGTCTCATCTGCTGAGGAACCTGGCAAGCATGACTGGTACAATTAATGGAAGAAATATAGCATCCTTATTGGAGGGATCTCAGGAATTGGTAAAAGCAGGGACATCTGGAGCTGCACAGAATGTTCCAAACACAAATTCAAATGGTCCTGAACTGCCCAGACCTTTTGGTTCTTCTATCGAGATGGATAATGGTCTAATCCATCAAGACCCTCCAGCATCCAGGGTACAGTGTGAGATGGTTCCTGCTAATGATATGGCCCAAAAATGTATACCTTCAGGCAGTTGTGGAGTAGGAAGTTCAAAATCTCCTTTAGGACTGCAGTCCTCAGATGTACTTCTGCTTAGGGATAGCTCTCCTCCCCAATCAGTTGCAGCAGAGACTAGTATTGGAAGAAATGGGTTAAATAATATAGACCTGAATAATGTATATGATGATGTACAGGATCATGTTGAGAACCCCAAGAATTCTCATCTTCCTGTGGCATCAGGAATTGGGTCACTTGATCATCCTTCATGGGTACAATGTGACTCTCTCAAGTCAAGTCCACCACAGACAAGCAGAAACTCAGATTCAACCTCTACCCAGTCACCATCTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATAGTTTTCAAACTCTTTGGCAAGGATCCAAATGATTTTCCTCTTGTTCTCCGGTCACAGATCCTTAACTGGTTATCCCACAGTCCCACAGAGATAGAGAGCTATATAAGGCCAGGCTGTATCATATTAACTATATATCTCCGTCTAGAAAATTCTGCATGGGAGGAGCTATGCTATAATCTAGGATCCAGCATGAGAAAACTTCTTGCTGCATCAAATGATTCTTTTTGGAGAACAGGATGGGTATATACAAGGGTGCGGCACTCTGTAGCTTTCCTGTATAATGGTCAGGTGGTCTTAGACGCGCCATTGCGCCTCAAAAGCCAACAAAATTGTCAGATTTTGTGCATTAAACCACTCGCTGTTTCTGCAAGTGCAAGTGCTCAATTTATTGTGAAAGGATTCAACCTTTACCTGTCTAGCACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTACAGGATAGTTGTTATGATTTGATTGATGGTGCTGATGCAGCCACTGAACATCATGAGCTTCAGCATCTCAGTTTCTCTTGTCACATACCAAATGTGATTGGGAGAGGTTTTATTGAGGTGGAAGATAATGGACTTAGCAGCTGTTCATTTCCATTCATAGTTGCAGAGCAAGAAATTTGTTCAGAGATCTGTAGGCTGGAGAATGTCATTGAGGCAGCCGAGACTACTGATGATGTCCAGATAAAAACGAAACTAATGGAAGAAAAGACTCGAGCTTTGTATTGCATACAGGAAATGGGTTGGCTCCTTCATAGAAATCATATGAAAGCTAGACTAGGTCCCATGGCACCTGTCCAAGATGGCTTCCAGTTTAATCGGTTCACCTGGCTTGTTGGCTTCTCCATGGACCATGATTGGTGTGCCGTGATAAAGAAACTCTTGGACGTTATCTTTGCGGGTGTTGTTGATACAGGAGAGTATACCTCTGTTGAGCTTGCATTGTTAGACATGGGTCTTCTACACAAAGCAGTAAAGAGAAATTGCAGGCCTATGGTGGAATTACTGCTAAAATTTGTGCCAGTTAAAGCTTCGGATGGTGGAGACAGTGAAGAGAAGCAAGCCAACAAGTCCCCTGACAGATTCTTATTTAGACCTGACGCTGTTGGGCCTGCTGGGTTGACTCCCCTTCATGTTGCCGCAAGTATGAATGGCTCGGAGAATGTATTGGATGCATTAACTGAGGATCCAGGAATGGTGGGAACGGAGGCATGGAAAAGTGCTAGGGATAATACAGGTTTGACACCAAATGACTATGCATCCCTACGGGGCTTCTACTCCTACATTCAACTTGTTCAGAGGAAAACAAGCAAGAAATGTGGAAGTCAACATGTGCTTGATATCCCAGGCACCCTTGTAGACACTAACATAAAGCAGAAGCAATCAGATGGGCATAGGTCATCAAAAGTTTCATGTTTGCAAACTGAGAAGATTGAAATAAAAGCAATGCCACATCATTGTGGGCTCTGCCAGCGCAAGCTGGCATATGGTGGCGTCAGAAGGGCACTGGTTTATCGGCCGGCAATGCTGTCGATGGTGGCCATTGCAGCTGTATGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCCCCCAGAGTTAATTATGTATTCCAGCCCTTCACCTGGGAATCATTGGAGTATGGATCCATCTAA 3081 0.4395 MEAKFEGKNQYFYGPLLPEMKAVGKRSLEWDLNDWKWDGDLFTARQLNSVPSDCRSRQLFPVDPETPANADTSNNLSSGWEGNRELEKRRRGVIAEGVQMNDENGSLNFNLGDQAYPIMEGEEKSEKKTKITGTTSNRAVCQVEDCRADLSNAKDYHRRHKVCDLHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDATVVNGGSLNEERGSSYLLMSLLRILSNMHSDGSDHTRNQDVLSHLLRNLASMTGTINGRNIASLLEGSQELVKAGTSGAAQNVPNTNSNGPELPRPFGSSIEMDNGLIHQDPPASRVQCEMVPANDMAQKCIPSGSCGVGSSKSPLGLQSSDVLLLRDSSPPQSVAAETSIGRNGLNNIDLNNVYDDVQDHVENPKNSHLPVASGIGSLDHPSWVQCDSLKSSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKDPNDFPLVLRSQILNWLSHSPTEIESYIRPGCIILTIYLRLENSAWEELCYNLGSSMRKLLAASNDSFWRTGWVYTRVRHSVAFLYNGQVVLDAPLRLKSQQNCQILCIKPLAVSASASAQFIVKGFNLYLSSTRLLCALEGKYLVQDSCYDLIDGADAATEHHELQHLSFSCHIPNVIGRGFIEVEDNGLSSCSFPFIVAEQEICSEICRLENVIEAAETTDDVQIKTKLMEEKTRALYCIQEMGWLLHRNHMKARLGPMAPVQDGFQFNRFTWLVGFSMDHDWCAVIKKLLDVIFAGVVDTGEYTSVELALLDMGLLHKAVKRNCRPMVELLLKFVPVKASDGGDSEEKQANKSPDRFLFRPDAVGPAGLTPLHVAASMNGSENVLDALTEDPGMVGTEAWKSARDNTGLTPNDYASLRGFYSYIQLVQRKTSKKCGSQHVLDIPGTLVDTNIKQKQSDGHRSSKVSCLQTEKIEIKAMPHHCGLCQRKLAYGGVRRALVYRPAMLSMVAIAAVCVCVALLFKSSPRVNYVFQPFTWESLEYGSI 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2160g00010 1026 Gene3D - 781 924 IPR036770 -
Gabi2160g00010 1026 ProSiteProfiles Zinc finger SBP-type profile. 138 215 IPR004333 GO:0003677
Gabi2160g00010 1026 Pfam SBP domain 141 214 IPR004333 GO:0003677
Gabi2160g00010 1026 MobiDBLite consensus disorder prediction 61 84 - -
Gabi2160g00010 1026 MobiDBLite consensus disorder prediction 436 467 - -
Gabi2160g00010 1026 MobiDBLite consensus disorder prediction 205 226 - -
Gabi2160g00010 1026 MobiDBLite consensus disorder prediction 295 330 - -
Gabi2160g00010 1026 MobiDBLite consensus disorder prediction 295 313 - -
Gabi2160g00010 1026 Gene3D - 132 202 IPR036893 GO:0003677|GO:0005634
Gabi2160g00010 1026 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 68 908 IPR044817 GO:0003677
Gabi2160g00010 1026 SUPERFAMILY SBT domain 139 220 IPR036893 GO:0003677|GO:0005634
Gabi2160g00010 1026 MobiDBLite consensus disorder prediction 67 81 - -
Gabi2160g00010 1026 SUPERFAMILY Ankyrin repeat 795 909 IPR036770 -
Gabi2160g00010 1026 FunFam Squamosa promoter-binding-like protein 14 132 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2160g00010 Gabi-Chr2160 154671 167346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2160g00010 1 1025 SBP-box Gene Family AT3G60030 47.087 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi2160g00010 SBP 1.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2160g00010 - - gmx:100776125 1709.5