Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2160g00008 ATGGCTTCTGATCTGAATTCTGGTTTGTCGAAGAAGACGTTTGTTTTTGGATTGAAAGTATGGGTATTAATGGGAATAATAGTTGGTTTGTTCATTATAATCATTCTTGTGGTGCTATCAATTTGTCTTACCTTGAGAAAGAAGTCCAGAAGAGTCAATGGGAAGCTTTCACTTAGCCATATGCTATCTGTTTCAGAAGAGATCAAAGAAATAAGAGTTGATCAAGTTTCAGCAAATAATCATCCGCAAAACGGTGCTTTTATTAGTCTGAATGACAAATTTGGTGACAGAGAGTCTGAAAAGGTTTTCATCCAAACAAAGAATGGGGATAATAGTTCTCAATCTGGCTCATTTAATCATTTAGAGAAAGATGCTAATGGCTCTCAATCAGGTGAAGAAGGCGGTGTTAAGAACTTTTCTGCTTACCGGTCTTCTTCGCATCCTATAACTGCGCCATCGCCTTTGTCTGGCCTGCCTGAGTTCTCTCACCTTGGCTGGGGACATTGGTTTACATTGAGGGACCTGGAACTTGCAACAAACAGGTTTTCAAAAGACAATGTTATTGGTGAAGGTGGATATGGAATTGTGTATCGAGGTCAGCTAATCAATGGGAGTCCTGTGGCCGTTAAGAAGCTCCTCAATAATTTAGGACAAGCTGAAAAGGAATTTAGGGTGGAAGTTGAGGCTATCGGTCATGTGCGGCATAAGAACTTGGTTAGACTTTTGGGCTATTGCATTGAGGGAACTCACAGGTTATTGGTTTATGAGTATGTTAACAATGGGAATTTAGAGCAGTGGCTTCACGGAGCCATGCGGCAGCATGGCTTTCTTACTTGGGATGCTCGAATAAAAATTCTCCTTGGAACAGCTAAAGCGCTGGCTTACTTGCATGAGGCAATTGAGCCAAAAGTTGTGCATCGAGATATTAAGTCAAGCAATATTCTAATTGATGATGAGTTTAATGCCAAAATATCTGACTTTGGGCTGGCTAAGTTGCTGGGCGCTGGAAAAAGTCATATCACAACTAGAGTAATGGGTACTTTTGGATATGTAGCTCCAGAATATGCCAATTCTGGCTTGCTAAGCGAGAAGAGTGATGTTTACAGCTTTGGGGTATTGCTCCTTGAAGCAATCACAGGAAGAGACCCAGTGGATTATAGCCGACCAGCAGCTGAGGTGAATTTGGTTGACTGGCTCAAGATGATGGTAGGGTGTAGGCGCTCAGAAGAGGTGGTGGACCCCAACATTGAGACTAGGCCATCAACAAGTGCCCTTAAACGATCCCTTTTAACTGCTTTGAGGTGTGTTGATCCAGATGCTGAAAAAAGACCAAAGATGAGCCAAGTTGTCCGCATGCTTGAATCAGAGGAATATCCTATACCTCGAGAGGATCGAAGACGCCGACTGAGTCAGGCAGGGAACATAGAGGTGGAGGCCCAGAGGGAGACTTCTGATACAGATAAGAGTGACAATCCAGATTATAAGCCCAACCCCAAATCCAATGGCAGAAGGAACCAACACATGTAG 1527 0.4303 MASDLNSGLSKKTFVFGLKVWVLMGIIVGLFIIIILVVLSICLTLRKKSRRVNGKLSLSHMLSVSEEIKEIRVDQVSANNHPQNGAFISLNDKFGDRESEKVFIQTKNGDNSSQSGSFNHLEKDANGSQSGEEGGVKNFSAYRSSSHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKDNVIGEGGYGIVYRGQLINGSPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQHGFLTWDARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLSEKSDVYSFGVLLLEAITGRDPVDYSRPAAEVNLVDWLKMMVGCRRSEEVVDPNIETRPSTSALKRSLLTALRCVDPDAEKRPKMSQVVRMLESEEYPIPREDRRRRLSQAGNIEVEAQRETSDTDKSDNPDYKPNPKSNGRRNQHM 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2160g00008 508 FunFam Putative receptor-like protein kinase 164 257 - -
Gabi2160g00008 508 SUPERFAMILY Protein kinase-like (PK-like) 166 461 IPR011009 -
Gabi2160g00008 508 Gene3D Transferase(Phosphotransferase) domain 1 258 468 - -
Gabi2160g00008 508 ProSiteProfiles Protein kinase domain profile. 182 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2160g00008 508 Pfam Protein kinase domain 183 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2160g00008 508 CDD STKc_IRAK 188 454 - -
Gabi2160g00008 508 MobiDBLite consensus disorder prediction 443 472 - -
Gabi2160g00008 508 ProSitePatterns Protein kinases ATP-binding region signature. 188 211 IPR017441 GO:0005524
Gabi2160g00008 508 MobiDBLite consensus disorder prediction 107 139 - -
Gabi2160g00008 508 PANTHER OS01G0323000 PROTEIN 4 483 - -
Gabi2160g00008 508 MobiDBLite consensus disorder prediction 443 508 - -
Gabi2160g00008 508 SMART serkin_6 182 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2160g00008 508 Gene3D Phosphorylase Kinase; domain 1 164 257 - -
Gabi2160g00008 508 MobiDBLite consensus disorder prediction 480 494 - -
Gabi2160g00008 508 FunFam Putative receptor-like serine/threonine-protein kinase 258 469 - -
Gabi2160g00008 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2160g00008 Gabi-Chr2160 86671 91252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2160g00008 17 456 Trihelix Transcription Factor Family AT1G70460 40.899 3.73e-96 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gabi2160g00008 Pkinase 4.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2160g00008 - - gmx:732653 913.294