Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi215g00003 ATGACTATGATAAGGGTCATGTTGGAGGAGATAAGGGCTGGTCCTGGTGTTGGTCAGTTCCCACCTCCACCGCCACCACCGCCTCTACCTCCACCTAGTATGCAGGACGAGAGCCAGAGCCATGTTGAGGGCACTGGTCATACTACTGGGGTGATAGAACCCTATGTGGAGCCTGCTGAGGATCGCGATGTGAACTGTGCATTGATTGAATGTTGTGCCAAACGAGTGGTAATGTCTCTGGTTGATTCTACAGCCAGTTCCTCGCCATATATTTCTCAATCTTCAGCAACTCTGGCTAATCCATGGTGGACGGGTCAGGTGGGGTTAGCAGGGGTAGACCCTGCAACCAATTCACCTTCTTTGAACAAAAGAAGCCACACAGAGCTTTCAATCAACGAAAGCAACAACAACAACAACAATAGAGACGAAGATGATGAAGACAGAGACAACTGTGATGAACCAAAAGAAGGTGCAGTTGAAGTTGGAAACAGAAGACCAAGAGGGAGACCCCCAGGTTCCAAAAACAAGCCAAAACCACCAATCTTTGTAACAAGGGATAGTCCAAACTCTCTTAGAAGCCATGTTATGGAGGTAGCTGGTGGTGCTGATGTAGCTGAAAGTGTTGCTCAGTTTGCAAGGAGGCGTCAACGTGGTGTTTGTGTTCTCAGTGGAAGTGGCTCTGTTGCAAACGTTACTCTTAGACAACCTGCAGCACCTGGTGCTGTTGTTGCACTTCATGGAAGGTTTGAGATTTTGTCCTTAACTGGGGCATTCTTACCAGGACCTGCCCCTCCTGGTGCCACAGGTCTCACAGTGTACCTTGCTGGAGGACAGGGTCAAGTTGTTGGAGGAAGTGTTGTTGGGTCTTTAGTTGCTGCAGGACCTGTTATGGTTATTGCTGCAACTTTTGCTAATGCTACTTATGAAAGATTGCCCCTTGAGGATGATGATGAGGGTGGTGGTGGTGGTGGTAGCAGTGCCGTGCAAGGTGGTGGAGCTTTGGGAGGTTCTCCGCCACCGGGAATTGGAAGTAGTGGTGGTCAATTGCAAGCTACTCTTCAAGATCCATCATCTTTGCCTTTGTATAATCTTCCACCAAATCTTCTTCCCAATGGAGGGCATGAAGCTTTTGCTTGGGGTCATGGACGGCCACCTTATTGA 1161 0.4884 MTMIRVMLEEIRAGPGVGQFPPPPPPPPLPPPSMQDESQSHVEGTGHTTGVIEPYVEPAEDRDVNCALIECCAKRVVMSLVDSTASSSPYISQSSATLANPWWTGQVGLAGVDPATNSPSLNKRSHTELSINESNNNNNNRDEDDEDRDNCDEPKEGAVEVGNRRPRGRPPGSKNKPKPPIFVTRDSPNSLRSHVMEVAGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGAFLPGPAPPGATGLTVYLAGGQGQVVGGSVVGSLVAAGPVMVIAATFANATYERLPLEDDDEGGGGGGSSAVQGGGALGGSPPPGIGSSGGQLQATLQDPSSLPLYNLPPNLLPNGGHEAFAWGHGRPPY 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi215g00003 386 MobiDBLite consensus disorder prediction 312 366 - -
Gabi215g00003 386 Gene3D - 191 318 - -
Gabi215g00003 386 CDD DUF296 192 275 IPR005175 -
Gabi215g00003 386 FunFam AT-hook motif nuclear-localized protein 191 318 - -
Gabi215g00003 386 SUPERFAMILY AF0104/ALDC/Ptd012-like 188 315 - -
Gabi215g00003 386 MobiDBLite consensus disorder prediction 343 361 - -
Gabi215g00003 386 MobiDBLite consensus disorder prediction 13 48 - -
Gabi215g00003 386 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 130 382 IPR014476 GO:0003680
Gabi215g00003 386 ProSiteProfiles PPC domain profile profile. 188 327 IPR005175 -
Gabi215g00003 386 MobiDBLite consensus disorder prediction 114 189 - -
Gabi215g00003 386 MobiDBLite consensus disorder prediction 17 34 - -
Gabi215g00003 386 MobiDBLite consensus disorder prediction 114 137 - -
Gabi215g00003 386 Pfam Plants and Prokaryotes Conserved (PCC) domain 192 304 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi215g00003 Gabi-Chr215 77404 87164 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi215g00003 98 386 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 62.034 7.25e-104 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi215g00003 - - mesc:110601522 371.703