Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2157g00020 ATGAATTGCGTCTCTAGTAACCAAATCCGACTTCGGAAGACCTTTTTGATGGGGGTAACTGGTCAAAGTAGATTCAGCAAGAAAATCCAAGTTGCGCTCAACGAGCTTAGAACTCAGATAAATGCAATTGAAAGCAGGCCTGTAATTATGGGAAATGCGGAGTCAATGGATGAACCTCAAGATAATTTTTACCGACCACCCCCTTCTTATGCTGGGAGTCCAGTGAATAATAGTAATAAAAGTGTAACGGCAAAGAAAAAGTCAGGCAAAGCTCCTCAAAAAAAATATGATGTTTTTGTTAGCTTCAGGGGCCCGGACATTCGTCATGATTTTCTCAGCCATTTGATTGATGCTTTTCGTCGAAAGCAAATATATGCCTTTGTAGATTATAAACTTGAAAGAGGAGATGAAATATCACCGTCATTTTTTGAAGCAATCGAAACATCATTAATTTCATTGATCATATTCTCAGAAGACTATGCTTCTTCACATTGGTGTTTGGAAGAACTTGAGAAAATAGTTGAGTGCAGAGACAAATATGGACAGACTGTAATACCTATTTTCTACAATATAGATCCCACAAATGTACGACATCAAAAGAAGAGTTATGGAGAAGCGCTAGCTGAACATGAAAAAAAGTATAATATGACAAGGGTGCAAACATGGAGGGATGCTTTGAACAAATCTGCAAATTTATCTGGAATTAAGTCATCAGATTTCCGGGATGAAGTCCAGCTACTTGATGAAATCATCAAAACCATCAATCATCAATTAACGATGAGGTTAAATAAGCAGCCAATTCAGTCAAAAGAACTTGTTGGAATTGGCAAATCAATTGTACATTTAGAATCATTGTTACGTCAGGAGTCAAAAGATGTGCGTGTTATTGGAATTTGGGGTATGGGCGGTATTGGCAAGACAACCATTGCACAAGAAATTTTTAACAAACTAAGTTCTGAATATGATGGTTGTTGTTTTTTGGCAAACGTGAGAGAAGAATTAACAAGAGGCAGTGTCAATTCCTTAAAAGAGAAACTCTTTTCTACAATATTAGCTCAAGATGTGAAAATTAACACAGCAAATGAATTGCCCGGTTCCGTGATGACGAGGCTTGGTCGTATAAAGGTTCTCATTGTTCTAGATGATGTCAATTATGTAGATCACCTAAAAATTTTGGTTGGAGGTCATGATCGGTTTGGACTAGGTAGTAGAATCATTGTAACAACTAGAAATATGCAAGTGCTTGTGGCTTACAAAGTTGATGATGATGACATATACGAGGTAGGAGCATTGGAGTTTGACGAAGCACTTGAGCTTTTCAATTTTCATGCCTTCAAACAAAATCATCTTGATATGGAGTATTATGAGCTATCAAAGAGGGTGGTCAAATATGCCAAAGGGATGCCGTTAGTTCTTAAAGTTTTGGGTCATCTTCTTTGTGGAAAAGATAAGGAAGTGTGGGAAAGTCAGATAGACAACATTAAAAGAATACCAGATAAGACAGTTTATGATGTAATGAAGCTAAGCTATGATGATCTAGATCGCAAAGATAAAAGGATATTTTTAGATCTTGCATATCATGCAAGTGATAATGCAGTGGTTGCTGGGTTAGAAAGGCTCAAAGACAAAGCTCTTATAATTATTTCTAAATATAATGTCGTCTCAGTGCATGATATTATACAAGAAATGGCTTGGGAAATTGTTTGGCACAGATCTAATGAAGATTATGGAAGCTGCAGTCATTTGGGGGATCCTAATGATGTTTTTGAAGGATTAAAATATGACAAGGGGTCTATGGCCATTAGAAGCATAAGGGCGTTCTTTTCACAAGGCAGTGAGCTCATGTTGAGCCCTCACGTATTTGCTAAGATGAGCAAACTACAATTTATGGATTTTGAATGCGCATATGATCTGGAATGCTTATATCTTCTTCCTCAAGAGCTTGCATCTTTGCCAACTGAACTAAGATATCTTCGTTGGAAGAGTTACCCTCTGAAATCCTTGCCAGTGAAATTTTCTGCGGAAAAACTTGTTATGTTGGACTTATCATACAGTAGTGTGGAAAAACTTTGGGATGGAGTACAGAATTTGGTGAATTTGAAAGAAGTTAACCTCTCTCGGTCGAGATTATTGAAGGAGCTGCCAGACTTTTCAATAGCCACTAACCTTGAAGTACTTGATATCTCTTGGTGTGAAAAGTTGACTAGCGTTCACATATTCTCTCTCCACAAGCTTGAGGAATTGGATGTACATTGCTGCAGTTCCCTTGTCAGACTTACAAGCGATACCCGTTTAAACTCTCTCAAATGTCTGAACCTTGAAACCTGCCATAAACTCAGGGAATTCTCAGTAACATCAGCGAATATGATCGAACTGAATTTAAGATTCACCTGTGTGGATGCATTGCCCGCATCTTTTGGACATCAAAGCAAGCTTGAAATCCTAGACCTTGCATGTTGTGAAATTGAGAGCTTTCCTTCATCAATCAAAAATCTTACAAGACTGCACCATCTAAACGTAGATGGTTGTCAGAAGCTTAAGACTCTACCCGAACTTCCCCCCTCCCTTCAAACTCTACTTGCCAAATATTGCAGATCATTGGAGACTGCATTGTTCCCTTCAACTGCCACTGAACAATTCAATGAAAATAGGAGAAGGGTTCAGTTCTGGAATTGCTTGAACTTAGTTGAACATTCTCTCATGGCTATTGAGTTAAATGCGCAAATTAACGTGATGAATTTGGCACATACAAATTTATCCATGGGAGAACACCGTCATATTCAAAATTACTATCGTCAAGCAAAGTACGCGTATGTGTATCCAGGATGCAGAGTTCCAGATTGGTTGGAGTATAAGACGACAACTGATTATGTAATTATTGATCTCTCTTCTTCTCCAACCTCCCCTCCGTTAGGCTTCATTTTCGGCTTCATCATCGGAGAGAAACAAGTAATTAGCTCATTGAAATTTAACATCATTATCACTGATGGTGAGGGTGAGGGTAACATGGGCAGTGTCCATATGTACATGGCTACGCAAACTATCGTCTTTGCTGACTCTGATCATGTGTGTGTGTTGTACGACGAGCACTGTTCTAGCTACCTAAATAGCAAGGCCAGGACACAGACAAGGTTTAAAATCAAGGTTACAGTAGACTCAGAAATAACATCATTGCGGATTGCCTTAAAAGGGTTTGGGGTTCTTATTGTTCTTGATGATGTAAATGATCCAAATCAACTAGAAGTTTTAGTTGGAGATCATGATTGGTTTGGAACTGGTAGTAGAATCATTGTAACAACTAGAGATAAGCAGGTGGAAGAAGTTTATGGTGTGCTGAAAAGTAAGAAGTCTTCCGAGGCACAAGCATCTGGTGCTAGTGGAGCAACTGGCTCTACTTCAGAAAAGGGTAAGAAGATGGATGACAGGAGTATTAAAGAAAGATTACAAGCTAAACAATCTGAGGAAAAGTTTAAGAGAAGCGGGAGTCAACAGAGTTGGGACAATGAAAGACCTCTTGTGCCCCAGTGTGACAACTGTGGGAGGCATCACAAGGGCGTTTGTTTGATGGGTCAAAACGTATGTTTCAAGTGTGCTAGACCTGGTCACTATGCGAGGGATTGTCCCCAGATCGTGGGACGAGTTGCTCATGTGCAAGTGGTCTATGACCCTTCAGCAGCGGCAAATGTTAGCACTTCGACCCAACCCCAGCTAGAGAGGTTCCCACGCTTGACGGGAG 3736 0.3948 MNCVSSNQIRLRKTFLMGVTGQSRFSKKIQVALNELRTQINAIESRPVIMGNAESMDEPQDNFYRPPPSYAGSPVNNSNKSVTAKKKSGKAPQKKYDVFVSFRGPDIRHDFLSHLIDAFRRKQIYAFVDYKLERGDEISPSFFEAIETSLISLIIFSEDYASSHWCLEELEKIVECRDKYGQTVIPIFYNIDPTNVRHQKKSYGEALAEHEKKYNMTRVQTWRDALNKSANLSGIKSSDFRDEVQLLDEIIKTINHQLTMRLNKQPIQSKELVGIGKSIVHLESLLRQESKDVRVIGIWGMGGIGKTTIAQEIFNKLSSEYDGCCFLANVREELTRGSVNSLKEKLFSTILAQDVKINTANELPGSVMTRLGRIKVLIVLDDVNYVDHLKILVGGHDRFGLGSRIIVTTRNMQVLVAYKVDDDDIYEVGALEFDEALELFNFHAFKQNHLDMEYYELSKRVVKYAKGMPLVLKVLGHLLCGKDKEVWESQIDNIKRIPDKTVYDVMKLSYDDLDRKDKRIFLDLAYHASDNAVVAGLERLKDKALIIISKYNVVSVHDIIQEMAWEIVWHRSNEDYGSCSHLGDPNDVFEGLKYDKGSMAIRSIRAFFSQGSELMLSPHVFAKMSKLQFMDFECAYDLECLYLLPQELASLPTELRYLRWKSYPLKSLPVKFSAEKLVMLDLSYSSVEKLWDGVQNLVNLKEVNLSRSRLLKELPDFSIATNLEVLDISWCEKLTSVHIFSLHKLEELDVHCCSSLVRLTSDTRLNSLKCLNLETCHKLREFSVTSANMIELNLRFTCVDALPASFGHQSKLEILDLACCEIESFPSSIKNLTRLHHLNVDGCQKLKTLPELPPSLQTLLAKYCRSLETALFPSTATEQFNENRRRVQFWNCLNLVEHSLMAIELNAQINVMNLAHTNLSMGEHRHIQNYYRQAKYAYVYPGCRVPDWLEYKTTTDYVIIDLSSSPTSPPLGFIFGFIIGEKQVISSLKFNIIITDGEGEGNMGSVHMYMATQTIVFADSDHVCVLYDEHCSSYLNSKARTQTRFKIKVTVDSEITSLRIALKGFGVLIVLDDVNDPNQLEVLVGDHDWFGTGSRIIVTTRDKQVEEVYGVLKSKKSSEAQASGASGATGSTSEKGKKMDDRSIKERLQAKQSEEKFKRSGSQQSWDNERPLVPQCDNCGRHHKGVCLMGQNVCFKCARPGHYARDCPQIVGRVAHVQVVYDPSAAANVSTSTQPQLERFPRLTG 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2157g00020 1245 ProSiteProfiles TIR domain profile. 94 258 IPR000157 GO:0007165
Gabi2157g00020 1245 Gene3D Ribonuclease Inhibitor 786 897 IPR032675 -
Gabi2157g00020 1245 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1053 1108 IPR044974 GO:0006952
Gabi2157g00020 1245 MobiDBLite consensus disorder prediction 1120 1171 - -
Gabi2157g00020 1245 SUPERFAMILY Retrovirus zinc finger-like domains 1178 1218 IPR036875 GO:0003676|GO:0008270
Gabi2157g00020 1245 SUPERFAMILY Toll/Interleukin receptor TIR domain 91 234 IPR035897 -
Gabi2157g00020 1245 PRINTS Disease resistance protein signature 295 310 - -
Gabi2157g00020 1245 PRINTS Disease resistance protein signature 370 384 - -
Gabi2157g00020 1245 PRINTS Disease resistance protein signature 465 479 - -
Gabi2157g00020 1245 PRINTS Disease resistance protein signature 763 779 - -
Gabi2157g00020 1245 Coils Coil 26 46 - -
Gabi2157g00020 1245 FunFam Disease resistance protein (TIR-NBS-LRR class) 92 260 - -
Gabi2157g00020 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1049 1111 IPR027417 -
Gabi2157g00020 1245 Gene3D - 430 514 IPR042197 -
Gabi2157g00020 1245 SMART c2hcfinal6 1193 1209 IPR001878 GO:0003676|GO:0008270
Gabi2157g00020 1245 Pfam TIR domain 95 260 IPR000157 GO:0007165
Gabi2157g00020 1245 Gene3D - 256 423 IPR027417 -
Gabi2157g00020 1245 Gene3D - 1130 1212 - -
Gabi2157g00020 1245 MobiDBLite consensus disorder prediction 71 86 - -
Gabi2157g00020 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 264 524 IPR027417 -
Gabi2157g00020 1245 Gene3D - 93 255 IPR035897 -
Gabi2157g00020 1245 Pfam NB-ARC domain 283 510 IPR002182 GO:0043531
Gabi2157g00020 1245 Gene3D Ribonuclease Inhibitor 602 785 IPR032675 -
Gabi2157g00020 1245 Gene3D - 1018 1111 IPR027417 -
Gabi2157g00020 1245 ProSiteProfiles Zinc finger CCHC-type profile. 1194 1209 IPR001878 GO:0003676|GO:0008270
Gabi2157g00020 1245 SMART till_3 95 232 IPR000157 GO:0007165
Gabi2157g00020 1245 MobiDBLite consensus disorder prediction 1134 1163 - -
Gabi2157g00020 1245 SUPERFAMILY L domain-like 609 920 - -
Gabi2157g00020 1245 Pfam Zinc knuckle 1193 1209 IPR001878 GO:0003676|GO:0008270
Gabi2157g00020 1245 MobiDBLite consensus disorder prediction 54 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2157g00020 Gabi-Chr2157 269452 292881 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2157g00020 94 851 WRKY Transcription Factor Family AT4G12020 32.107 1.60e-86 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2157g00020 - - aprc:113850949 1199.88