Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2157g00017 ATGGCTCCTAGAATAAAGTATGGTGTAGGGGCAAAGTTAATGGCAGACAACGCTCCTAAAATGAAATATGATGTTTTTGTTAGCTTTAGGGGCAAGGACATTCGCCGAGGTTTGCTTAGCCATTTGATTAAGGATTTTCGTCGGAAGCAAATATATGCCTTTGTAGATGATAAGCTTCAGAGGGGAGATGAAATATCATCATCACTTATTGCGGCAATTGAAGGCTCATTCTGTTCGTTGATCATATTCTCTAAAGACTATGCTTCTTCACATTGGTGTTTGGAAGAGCTTGTGAAAATAGTTAAATGCAGAGAGAAGTATGGACAGACTGTAATACCTGTTTTCTACAATGTAGATCCCACAAATGTACGACATCAAAAGGAGAGTTATGGAAATGCGCTTGCTAAACATGAAGAAAAGTATAATTTGACAAAGGTGCAAAGATGGAGAGATGCTTTGAACAAATCTGCAAATTTATCAGGAATTAAGTCATTGGATTTTCGAGATGATGCCGAGCTGCTTGAAGAAATCATCAAGACCATCAACCTTGAGTTGAAGAGGTTGAAACAGCACGCAGTTCATTCAAAAGGACTTGTTGGAATTGACAAACCAATTTTACATTTAGAATCTTTATTATGTCAAGATTCAAAAGACGTTCGTGTTATTGGAATTTGGGGTATGGGCGGTATTGGAAAGACAACCATTGCACAAGAAGTATTTAACAAACTAAGTTTTGAATATGAAGGAGGTTGTTTTTTGGCAAATGTAAGGCAAGAATCTGCAAGAGCAGGTGGAACCAATTCCTTAAAAGAAAAACTTTTTTCAACACTTTTAGCAGAAGATGTGAAAATTAACACAACAAATGAATTGCCCGATTATGTTATGTTGAGGCTTGGTCGCATGAAGGTTCTTATTGTTCTTGATGATGTTAATGATCCAGATCAACTAGAAGTTTTAGTTGGAGATCATGATTGGTTTGGAACAGGTAGTAGAATCATTATTACAACTAGAGATAAACAAGTGCTTATGAATGAAGTTGTTGATGATGATGATATATATGAGGTAGGGGCATTGGATTTTGAAGAAGCACTTAAGCTTTTCAATTTGAATGCCTTCAAACGAAATCATCTTGAAATGGAGTACTATGAGCAATCAAAGAAGGTGGTCAATTATGCCAAATGCATTCCATTAGTTATTAAAGTTTTTGGTCATCTTCTTTGTGGAAAATATCAAGATAAATATATTTTGCATTTAGTTTTTCTGTTTATTATGTTTTGTTTAGTGTACATAGCATGA 1296 0.3526 MAPRIKYGVGAKLMADNAPKMKYDVFVSFRGKDIRRGLLSHLIKDFRRKQIYAFVDDKLQRGDEISSSLIAAIEGSFCSLIIFSKDYASSHWCLEELVKIVKCREKYGQTVIPVFYNVDPTNVRHQKESYGNALAKHEEKYNLTKVQRWRDALNKSANLSGIKSLDFRDDAELLEEIIKTINLELKRLKQHAVHSKGLVGIDKPILHLESLLCQDSKDVRVIGIWGMGGIGKTTIAQEVFNKLSFEYEGGCFLANVRQESARAGGTNSLKEKLFSTLLAEDVKINTTNELPDYVMLRLGRMKVLIVLDDVNDPDQLEVLVGDHDWFGTGSRIIITTRDKQVLMNEVVDDDDIYEVGALDFEEALKLFNLNAFKRNHLEMEYYEQSKKVVNYAKCIPLVIKVFGHLLCGKYQDKYILHLVFLFIMFCLVYIA 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2157g00017 431 Gene3D - 357 417 IPR042197 -
Gabi2157g00017 431 Pfam TIR domain 22 196 IPR000157 GO:0007165
Gabi2157g00017 431 Pfam NB-ARC domain 211 408 IPR002182 GO:0043531
Gabi2157g00017 431 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 161 IPR035897 -
Gabi2157g00017 431 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 411 IPR044974 GO:0006952
Gabi2157g00017 431 ProSiteProfiles TIR domain profile. 21 185 IPR000157 GO:0007165
Gabi2157g00017 431 Coils Coil 171 191 - -
Gabi2157g00017 431 Gene3D - 182 349 IPR027417 -
Gabi2157g00017 431 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 187 - -
Gabi2157g00017 431 PRINTS Disease resistance protein signature 221 236 - -
Gabi2157g00017 431 PRINTS Disease resistance protein signature 392 406 - -
Gabi2157g00017 431 PRINTS Disease resistance protein signature 297 311 - -
Gabi2157g00017 431 Gene3D - 20 181 IPR035897 -
Gabi2157g00017 431 SMART till_3 22 159 IPR000157 GO:0007165
Gabi2157g00017 431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 411 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2157g00017 Gabi-Chr2157 217443 220037 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2157g00017 23 368 WRKY Transcription Factor Family AT4G12020 29.598 9.09e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2157g00017 - - aprc:113850949 549.666