Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2157g00016 ATGGCTCCTAGAATAAAGTATGGTGTAGGGGCAAAGTTAATGGCAGACAACGCTCCTAAAATGAAATATGATGTTTTTGTTAGCTTTAGGGGCAAGGACATTCGCCGAGGTTTGCTTAGCCATTTGATTAAGGATTTTCGTCGGAAGCAAATATATGCCTTTGTAGATGATAAGCTTCAGAGGGGAGATGAAATATCATCATCACTTATTGCGGCAATTGAAGGCTCATTCTGTTCGTTGATCATATTCTCTAAAGACTATGCTTCTTCACATTGGTGTTTGGAAGAGCTTGTGAAAATAGTTAAATGCAGAGAGAAGTATGGACAGACTGTAATACCTGTTTTCTACAATGTAGATCCCACAAATGTACGACATCAAAAGGAGAGTTATGGAAATGCGCTTGCTAAACATGAAGAAAAGTATAATTTGACAAAGGTGCAAAGATGGAGAGATGCTTTGAACAAATCTGCAAATTTATCAGGAATTAAGTCATTGGATTTTCGAGATGATGCCGAGCTGCTTGAAGAAATCATCAAGACCATCAACCTTGAGTTGAAGAGGTTGAAACAGCACGCAGTTCATTCAAAAGGACTTGTTGGAATTGACAAACCAATTTTACATTTAGAATCTTTATTATGTCAAGATTCAAAAGACGTTCGTGTTATTGGAATTTGGGGTATGGGCGGTATTGGAAAGACAACCATTGCACAAGAAGTATTTAACAAACTAAGTTTTGAATATGAAGGAGGTTGTTTTTTGGCAAATGTAAGGCAAGAATCTGCAAGAGCAGGTGGAACCAATTCCTTAAAAGAAAAACTTTTTTCAACACTTTTAGCAGAAGATGTGAAAATTAACACAACAAATGAATTGCCCGATTATGTTATGTTGAGGCTTGGTCGCATGAAGGTTCTTATTGTTCTTGATGATGTTAATGATCCAGATCAACTAGAAGTTTTAGTTGGAGATCATGATTGGTTTGGAACAGGTAGTAGAATCATTATTACAACTAGAGATAAACAAGTGCTTATGAATGAAGTTGTTGATGATGATGATATATATGAGGTAGGGGCATTGGATTTTGAAGAAGCACTTAAGCTTTTCAATTTGAATGCCTTCAAACGAAATCATCTTGAAATGGAGTACTATGAGCAATCAAAGAAGGTGCACAGATTGCCAGTGAGCCTACATGGGGCAAGGATACAACCCGTGGATAAAGTGCATCGCGGACCGAATTTTTGGGTAGCAGTCTACTTCTATTATTTTGGAGAATTGTGA 1275 0.3718 MAPRIKYGVGAKLMADNAPKMKYDVFVSFRGKDIRRGLLSHLIKDFRRKQIYAFVDDKLQRGDEISSSLIAAIEGSFCSLIIFSKDYASSHWCLEELVKIVKCREKYGQTVIPVFYNVDPTNVRHQKESYGNALAKHEEKYNLTKVQRWRDALNKSANLSGIKSLDFRDDAELLEEIIKTINLELKRLKQHAVHSKGLVGIDKPILHLESLLCQDSKDVRVIGIWGMGGIGKTTIAQEVFNKLSFEYEGGCFLANVRQESARAGGTNSLKEKLFSTLLAEDVKINTTNELPDYVMLRLGRMKVLIVLDDVNDPDQLEVLVGDHDWFGTGSRIIITTRDKQVLMNEVVDDDDIYEVGALDFEEALKLFNLNAFKRNHLEMEYYEQSKKVHRLPVSLHGARIQPVDKVHRGPNFWVAVYFYYFGEL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2157g00016 424 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 161 IPR035897 -
Gabi2157g00016 424 Gene3D - 20 181 IPR035897 -
Gabi2157g00016 424 Gene3D - 182 349 IPR027417 -
Gabi2157g00016 424 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 187 - -
Gabi2157g00016 424 Pfam NB-ARC domain 211 381 IPR002182 GO:0043531
Gabi2157g00016 424 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 389 IPR044974 GO:0006952
Gabi2157g00016 424 ProSiteProfiles TIR domain profile. 21 185 IPR000157 GO:0007165
Gabi2157g00016 424 SMART till_3 22 159 IPR000157 GO:0007165
Gabi2157g00016 424 Coils Coil 171 191 - -
Gabi2157g00016 424 Pfam TIR domain 22 196 IPR000157 GO:0007165
Gabi2157g00016 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 390 IPR027417 -
Gabi2157g00016 424 PRINTS Disease resistance protein signature 297 311 - -
Gabi2157g00016 424 PRINTS Disease resistance protein signature 221 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2157g00016 Gabi-Chr2157 217443 224850 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2157g00016 23 368 WRKY Transcription Factor Family AT4G12020 29.598 1.55e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2157g00016 - - aprc:113850949 520.776