Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2157g00015 ATGCCAGAGACAAAATTGGATCCATGCAAGAGACAATGCTGGCGTTCTAGAAGGGAGGTATTGCCTCAAGGAATTGTTGCTAGAACATCTAATTTGGAAATGCGGCCCTTATACATAAATAATAGAGTTCCAAAGAACCCGTTGAAGTTGTTGTCTATTGCAGCAGGAGTTAAGAAGAAAGAAATTGTCAAAAAGGGTGTAGCGGCAACGCTAACGTTGGACAATGCTCCTCAACAAAAATATGATGTTTTTGTAAGCTTTAGGGGCAAGGACATCCGCCACGGTTTTCTTAGCCATTTGATTGAGGCTTTTCAACGAAAGCAAATATTTGCCTTTGTAGATGATAAACTTGAGAGAGGAGATGAAATATCATCATCACTTCTTAGAGCAATTGAAGGCTCATTCATTTCGTTGATCATATTTTCAAAAGACTATGCTTCTTCTCATTGGTGTTTGGAAGAACTTGTGAAAATAGTTGAGTGCAGAGAGAAGTATGGACAAATTGTAGTGCCTGTTTTCTACAAGGCAGAACCCACGGATGTACGGCATCAAAAGGGGAGTTATGAAAACGCACTTGCTGAGCATGAAAAAAAGTATAATTCTACTAGGGTGCAAATCTGGAGACGTGCTTTAAATGAATCTGCTAATTTATCAGGAATTAAGTCATCACATTTTCGGGATGATGCTGAGTTGATTGAAGATATTGTCAATATTGTGTTGATCAGGTTAAGTAAGCACCCGGTTGACTCAAAGGGACTTATTGGAATTGATAAACCAATTGCACTTGTAGAATCATTGTTACATCAACAGTCAAAGGGTGTCCGTGTTATTGGAATTTGGGGTATGGGTGGGATTGGTAAGACAACTATTGCCGAAGAAACATTTAACAAACTAAGTTCTGAATATGAAGGTTGTTGTTTTTTGGCAAATGTAAGAGAAGAATCAAGAAGACATGGAATAATTTTTTTAAAGGAAAAGCTCTTTTCTACACTATTAGCGGGAGATGTGAAAATTAACACACCAAATGAATTGTCCAATAGTATTGAGAGAAGGATTGGTCGTATGAAGGTTCTTATTGTTCTAGATGATGTGAAGGATCCAGATCAACTAGAAATTTTAGTTGGAGGTCATGATCGGTTTAGAACAGGTAGTAGAATCATTGTAACAACTAGAGATAAGCAAGTGCTTACGGCATACAAAGTTGATGATGGTGATATATGTGAGGTAGGAGCATTGATGTTTGATGAAGCACTTAAGCTTTTCAATTTGCGTGCCTTCAAACAAAATCATCTTGAAATGGAGTACTCTGAGTTATCAAAGAGGGTGGTCAATTATGCCAAAGGCATTCCATTAGTTCTTAAAGTTTTGGCTCATCTTCTTTGTGGAAAAGATAAGGAAGCGTGGGAAAGTCAGCTGGACAAGCTTAAAAATATGCCAAGTACGAAAGTTTATGATGTAATGAAACTGAGTTATGATGATCTAGATCACAAAGAGCAAAAGATATTTTTAGATCTTGCATGCTTCTTCAGTGGGTTGAATTGGAATGTGGAAGATTTAAAAATTATATTGAAAGATCATGAAAGTGATAATTCAGTGGCTGTTGGGTTAGAAAGGCTGAAAGACAAAGCTCTTATAACTATTTCTAAAAGTAATTTTGTATCTATGCATGATATTTTACAAGAAATGGCTTGGGAGATTGTTCGCCAAGAATCTAGTGAAGACCCTGGAAGTCGCAGTCACTTGAGGGGTACTGATGTGATTCATGAAGTATTGTTGAATGACAAGGGGACTGAGGCCATTAGAAGCATACAGGTGGACTTGTCAGCATTTAATCAGTTGAAGTTAAGCTCTCACATATTTGCTAAGATGAGCAAACTACATTTTCTGCGTATTGATGACATACATGATTCACGCTACTTGAATTATCTTCCTCAAGGGCTTCAATCTTTGCCAACTGAACTAAGATATCTTTTTTGGGTGAAATACCCTCTTAAATCCTTGCCAGAGAAATTTTCTGCAGAAAAACTTGTATTATTCTACTTGGCACTTACTTCTGTGGAAAAACTTTGGGATGGAGTGCAGAATCTTATGAATTTAAAAAGAGTTCACCTTCATTCTTGTAAAGTCTTGAAGGAGCTACCAGATTTTTCAAAAGCACCAAATCTTGAAGTGCTGAGAATATCTTGGTGTGCAAAGTTGACCAACGTACATCCATCTATTTTCTCACTCGAAAAGCTTGAGAAATTGTATATAAAGAATATGATAGAGTTGCATTTATGTTTCACGGGCTTGAGTGCATTGCCCTCATATTTTGGACGTCAAAGCAAGCTTAAAATCCTAAGTCTTCGAGGAAGTCCCATTGAGAGCTTGCCTTCATCCATCAAGAATCTTACAAGACTGCAATATGTAGACGTATTTAAGTGCCAGAAGCTTCGGACTCTACCAGAGCTTCCCCCATCCCTTGAAACACTAGATGCTGGGAGGTGCATATCACTGAGGACTGTATTGTTCCCTTCAACAGCCGCTGAACAATTCAAGGAAAATAGGAAACGGGTTATGTTCTGGAATTGCGGGAACTTGGATGAACATTCTCTTGTGGCTATTGCATTAAATGCACAGATCAACATGATAAAATTAGCATATCAACATATATCTGCGCCAGAATATGATAATGTTGAAAATTATGACGATTACAATGATCACCGTGATCCCTGTCAAGCAGCATATGTCTACGCGTATCCAGGAAGTGGTGTTCCAGAGTGGTTTGAGTATAAGACCACAAATGATCATATTATTATTGATCTCTCTTCTCCACATTATTCCCCTCAGCTAGGCTTCATTTTCTGCTTCATCGTTGGCAAGCGCTTTTTTCTTGATCTTATGAAATTTAAGATCACTATCCGGGATGGTGAGGGTAGGGGTAAAAAGGATAGTGTTGAAATGTACTTGCGTAGTTTCGACTTTATTAAATTGGATCATGTCTGTGTGATGTACGACCAACGATGCTCTCTCTACCTAAATAGCATAGCCAAAAATCAGACAAGGCTGGTAGCCAAGGTTACAGCAAGCATAGCAACCAACGGCCATGAAGATAGAGTGTTGTTGAAAGGACTTGGGGTCAGCCTAATAAATGCCTCGGCATATCACAATTTCACGCAACAAATGGAATCGCGGATGTACCGAAGCAAGAAGCTCCTTCCTTTATCAACTTCTTTAGCACTTGCTGCAAAACTTGGAAGTGCTGAAGCTGTGGCTCTTTCCCTTGGTTCTGGCATTCTTATGAATATGATCCAAACATAA 3300 0.3848 MPETKLDPCKRQCWRSRREVLPQGIVARTSNLEMRPLYINNRVPKNPLKLLSIAAGVKKKEIVKKGVAATLTLDNAPQQKYDVFVSFRGKDIRHGFLSHLIEAFQRKQIFAFVDDKLERGDEISSSLLRAIEGSFISLIIFSKDYASSHWCLEELVKIVECREKYGQIVVPVFYKAEPTDVRHQKGSYENALAEHEKKYNSTRVQIWRRALNESANLSGIKSSHFRDDAELIEDIVNIVLIRLSKHPVDSKGLIGIDKPIALVESLLHQQSKGVRVIGIWGMGGIGKTTIAEETFNKLSSEYEGCCFLANVREESRRHGIIFLKEKLFSTLLAGDVKINTPNELSNSIERRIGRMKVLIVLDDVKDPDQLEILVGGHDRFRTGSRIIVTTRDKQVLTAYKVDDGDICEVGALMFDEALKLFNLRAFKQNHLEMEYSELSKRVVNYAKGIPLVLKVLAHLLCGKDKEAWESQLDKLKNMPSTKVYDVMKLSYDDLDHKEQKIFLDLACFFSGLNWNVEDLKIILKDHESDNSVAVGLERLKDKALITISKSNFVSMHDILQEMAWEIVRQESSEDPGSRSHLRGTDVIHEVLLNDKGTEAIRSIQVDLSAFNQLKLSSHIFAKMSKLHFLRIDDIHDSRYLNYLPQGLQSLPTELRYLFWVKYPLKSLPEKFSAEKLVLFYLALTSVEKLWDGVQNLMNLKRVHLHSCKVLKELPDFSKAPNLEVLRISWCAKLTNVHPSIFSLEKLEKLYIKNMIELHLCFTGLSALPSYFGRQSKLKILSLRGSPIESLPSSIKNLTRLQYVDVFKCQKLRTLPELPPSLETLDAGRCISLRTVLFPSTAAEQFKENRKRVMFWNCGNLDEHSLVAIALNAQINMIKLAYQHISAPEYDNVENYDDYNDHRDPCQAAYVYAYPGSGVPEWFEYKTTNDHIIIDLSSPHYSPQLGFIFCFIVGKRFFLDLMKFKITIRDGEGRGKKDSVEMYLRSFDFIKLDHVCVMYDQRCSLYLNSIAKNQTRLVAKVTASIATNGHEDRVLLKGLGVSLINASAYHNFTQQMESRMYRSKKLLPLSTSLALAAKLGSAEAVALSLGSGILMNMIQT 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2157g00015 1099 Pfam NB-ARC domain 262 492 IPR002182 GO:0043531
Gabi2157g00015 1099 Pfam TIR domain 80 239 IPR000157 GO:0007165
Gabi2157g00015 1099 SMART till_3 80 217 IPR000157 GO:0007165
Gabi2157g00015 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 505 IPR027417 -
Gabi2157g00015 1099 Gene3D - 412 495 IPR042197 -
Gabi2157g00015 1099 Gene3D - 78 245 IPR035897 -
Gabi2157g00015 1099 FunFam Disease resistance protein (TIR-NBS-LRR class) 77 245 - -
Gabi2157g00015 1099 Pfam C-JID domain 913 1008 IPR045344 -
Gabi2157g00015 1099 Gene3D - 246 403 IPR027417 -
Gabi2157g00015 1099 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 81 829 IPR044974 GO:0006952
Gabi2157g00015 1099 ProSiteProfiles TIR domain profile. 79 243 IPR000157 GO:0007165
Gabi2157g00015 1099 Gene3D Ribonuclease Inhibitor 755 864 IPR032675 -
Gabi2157g00015 1099 Gene3D Ribonuclease Inhibitor 591 754 IPR032675 -
Gabi2157g00015 1099 SUPERFAMILY L domain-like 604 867 - -
Gabi2157g00015 1099 SUPERFAMILY "Winged helix" DNA-binding domain 481 571 IPR036390 -
Gabi2157g00015 1099 SUPERFAMILY Toll/Interleukin receptor TIR domain 78 219 IPR035897 -
Gabi2157g00015 1099 PRINTS Disease resistance protein signature 446 460 - -
Gabi2157g00015 1099 PRINTS Disease resistance protein signature 276 291 - -
Gabi2157g00015 1099 PRINTS Disease resistance protein signature 694 710 - -
Gabi2157g00015 1099 PRINTS Disease resistance protein signature 351 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2157g00015 Gabi-Chr2157 188639 207889 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2157g00015 79 841 WRKY Transcription Factor Family AT4G12020 32.045 1.93e-90 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2157g00015 - - aprc:113850949 1246.11