LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2157g00008	ATGCAACACTCAAATTGGGATAAGGAAAATATTGTAGTTCACTGCTATATTCTTAATAGTCTTCCTAAACACTTGTTGGAGCAAGTAAACATGGTTGAGAGTAGAGCAGAGATGCTTCAGACTCTTGATGACCTATATGCTATGTCCAGCAGTTCCGCTGAACAGAATGTACTAAGTGCAACAGGTTTTGCTGAGAGTTTTGTTAATAGGAAATCCAAGGGTGGTAACAAGAACATAGCATCATACATGCTGAGAGTAGCACGATCGGGACCAATTTATACAATGCCAGACACAAGATTTGATCCATGCAAGAGACAATGCTGGCGTTCTAGAAGGGAGGCATTGCCTCAAGGAATTGTTGCTACAACATCTAACTTGGAAATGCGGCCCTTATATATGAGTAATAGAATTTCAAAGAACCCATTGAACTTGTTGTCTATTGCAGCAGGAGTTAAGAAAAAAGCATTTGTCAAAAAGGGTGTAGCGGCAAATCTAACGTCAGACAGTGCTCCTCGATATGATGTTTTTGTAAACTTTAGGGGCAAGGACATCCGCCCCGGTTTTCTTGGCCATTTGATTGTGGCTTTTCAAAAAGAGCCAATAAATGCCTTTGTAGATGATAAACTTGAGCGAGGATATAAAGTATGGCCATCACTTGTTGGAGCAATTAAAGACTCATTCATTTCGTTGATCATATTCTCAAAAGACTATGCTTCTTCTAGTTGGTGTTTGGACGAACTTGTGGAAATAGTTGAGCGCGGAGAAAAATATGGACAGATTGTAGTGCCTGTTTTCTACAATGTAGAACCCACGGATGTACGACATCAAACGGGGAGTTATGGAAAGACACTTGCTGAACATGAAAAAAAGTATAATTTCCCTTTTTTTTGGTGGAAAAAGTATAATTCTACTAGGGTGCAAAACTGGAGACATGCGTTAACCGAATCTGCTAATTTATCAGGAATTACGTCATCAAAATTTCGGACTGATGCAGAGCTGGTAAAAGAAATTATCAAAACCGTCAATCTTGAGTTGAAGAAGTTGGATAAGAACCCAATTCACTCAAAAGGACTCGTAGGAATATGCAATCCAATGGAACATTTAGAGTCATTGTTACATCAAGAGTCAAAAGATGTGCGTATTATTGGAATTTGGGGTATGGGCGGTATTGGTAAGACTACCATTGCACAAGAAGTATTTAACAAGCTAAGGTCTGAATATCATCGTTGTCGTTTTTTGGCAAGCGTAACGGAAGAATCAAGAAGACCTGGGATAATGTCTTTGAAAGAAAAATTGTTTTCTAAACTTTTACGAGATGATGATGTGGAAATTAACACACCAAATGGATTGTCCGAATATGTTATAAGGAGGCTTGATAGTATGAAGGTTCTTATTGTTCTTGATGATGTAAATGATCCAAATCAACTAGAAGTTTTAGTTGGAGATCATGATTGGTTTGGAACTGGTAGTAGAATCATTGTAACAACTAGAGATAAGCAGGTGTTAGCTAACAAAGTTGATGATATATACCAGGTTGGGGCATTGAGTAATAGTGAAGCACTTGTGCTTTTCAATTTGCATGCCTTCAAACAAAATCATCTTGAAATGGAGTACTCTACGCTATCAAAGGGGGCGGTCAATTATGCCAAAGGCATTCCATTAGTTCTTAAAGTTTTGGGTCGTCTTCTTTGTGGAAAAGATAAAGAAGTGTGGGAAAGTCAGCTGCACAAACTTAAAAATATGCCAATTAAGGAAGTTTATGATGTAATGATACTGAGTTATAATGATCTAGATCACAAAGAGAAAAAGATATTTTTAGATCTTGCATGCTTCCTCTGTGGGTTGAAAGTGTATGTTATAAAAGATATGTTGAAAGATCATGAAAGTGATAATTCAGTGGCTGTTGGTTTAAAAAGGCTGGAAGACAAGGCTCTTATAACTATTTCTGAAAATAATGTTGTATCTATGCATGAAAAGTTACAAGAAATGGCTTGGGAGATTGTTCGCCAAGAATCTAGTGAAGACCCTGGAGGCCGCAGTCACTTGAGGGATGCTGATGTTCATGAAGTATTGTTGAATGACAAGGGGACTGAGGCCATTAGAAGCATACAGGTGAACTTGTTTGCATTTAAGCCGTTGAAGTTAAACCCTCACATATTTGCTAAGATGAGCAAACTACATTTTCTGCAAATTGATGGCATAGTTACTTCAGACTACTTGAATTATCTCCCTGAAGGGCTTCAGTCTTTGCCAACTGAACTAAGATATCTTAATTGGATGAATTACCCTCTGAAATCCTTGCCAGAGAAATTTTCTGCTGAAAAACTTGTTCTATTGTACTTGTCACATAGTTCTGTGGAAAAACTTTGGGATGAAGATCAGAATCTTACGAATTTAAAATGTGTTCAACTTATTTCGTGTGGAGACTTGAAGGAGCTGCCAGACTTTTCAAAAGCCTCAAATCTTGAAGTACTGATTATCTTTTCGTGTGTTCAGTTGACCAGCATGCATCCATCTATTTTCTCGCTCGACAAGCTTGAGACATTGGATCTAAGTTCCTGCCTTTCCCTTATAAGACTTGAAACTGATACCCATTTAAGCTCCCTCAAATATCTCAACCTCGAAGGCTGCACAAGTCTCAAGGAATTCTCACTAACAGCAGAGAATATGATAGAACTGGATTTAAGATTCACGGGTTTGAGTGCATTGCAATGCTCATCTTTTGGACCTCAAAGCAAGCTTGAAATCCTACGCCTACGAGGAAGTTGCATTGAGAGCTTGCCTTCATCCATCAAGAATCTTACAAGACTGCGATATGTAGATGTAGGTAAGTGCAGGAACCTTCGGACTCTACCAGAGCTTCCCCCATCTCTTGAAAATCTAGATGCTGGATGGTGCACATCACTGATGACTGTATTGTTCCCTTCAACAGCCGCTGAACAATTTAAGGAAAATAAGAAATGGGTTACGTTCTGGAATTGCTTGAAATTGGATGAAAATTCTCTTGTGGCTATTGCATTGAATGCGCAGATCAATATGATGAAATTAGCATATCAACATGTTGAAAATTATGATGATTACAATGAGCACCATGATTCTTATCAAGCAATATATGCCTACACATATCCGGGAAGCAGTGTTCCAGAGTGGTTTGAGTATAAGACCATAAATGATCATATTATTATTGATCTCTCTCCTCCACATTCCCTTCAGCTGGGCTTCATTTTCTGCTTCATCATTGGCAAGCAATTTTTTCGTGATCGTGTGAAATTTAAAATCACTATCCAGGATGGTGAGGGTGAAGGTAAAAAGGATAGTGTCGAAATGTACTTGGATACTGACGACTCAATGTTATTGGATCATGTCTGTGTGAGGTACGACAAAGGATGTTCTCTCTACCTAAACAGCTTAGCCAAAAATCAGACAAGGTTGAAAGTCAAGGTTACAGTAAGCATTGCAACCAACGACCATGAAGATAGAGTGTTGTTGAAAGGACTCGGGGTCAGCCTAATTAACACCTCGGCATATCACAATTTCAAGCAACAAATGGAATTGCGTGATTCTAATTAA	3570	0.3852	MQHSNWDKENIVVHCYILNSLPKHLLEQVNMVESRAEMLQTLDDLYAMSSSSAEQNVLSATGFAESFVNRKSKGGNKNIASYMLRVARSGPIYTMPDTRFDPCKRQCWRSRREALPQGIVATTSNLEMRPLYMSNRISKNPLNLLSIAAGVKKKAFVKKGVAANLTSDSAPRYDVFVNFRGKDIRPGFLGHLIVAFQKEPINAFVDDKLERGYKVWPSLVGAIKDSFISLIIFSKDYASSSWCLDELVEIVERGEKYGQIVVPVFYNVEPTDVRHQTGSYGKTLAEHEKKYNFPFFWWKKYNSTRVQNWRHALTESANLSGITSSKFRTDAELVKEIIKTVNLELKKLDKNPIHSKGLVGICNPMEHLESLLHQESKDVRIIGIWGMGGIGKTTIAQEVFNKLRSEYHRCRFLASVTEESRRPGIMSLKEKLFSKLLRDDDVEINTPNGLSEYVIRRLDSMKVLIVLDDVNDPNQLEVLVGDHDWFGTGSRIIVTTRDKQVLANKVDDIYQVGALSNSEALVLFNLHAFKQNHLEMEYSTLSKGAVNYAKGIPLVLKVLGRLLCGKDKEVWESQLHKLKNMPIKEVYDVMILSYNDLDHKEKKIFLDLACFLCGLKVYVIKDMLKDHESDNSVAVGLKRLEDKALITISENNVVSMHEKLQEMAWEIVRQESSEDPGGRSHLRDADVHEVLLNDKGTEAIRSIQVNLFAFKPLKLNPHIFAKMSKLHFLQIDGIVTSDYLNYLPEGLQSLPTELRYLNWMNYPLKSLPEKFSAEKLVLLYLSHSSVEKLWDEDQNLTNLKCVQLISCGDLKELPDFSKASNLEVLIIFSCVQLTSMHPSIFSLDKLETLDLSSCLSLIRLETDTHLSSLKYLNLEGCTSLKEFSLTAENMIELDLRFTGLSALQCSSFGPQSKLEILRLRGSCIESLPSSIKNLTRLRYVDVGKCRNLRTLPELPPSLENLDAGWCTSLMTVLFPSTAAEQFKENKKWVTFWNCLKLDENSLVAIALNAQINMMKLAYQHVENYDDYNEHHDSYQAIYAYTYPGSSVPEWFEYKTINDHIIIDLSPPHSLQLGFIFCFIIGKQFFRDRVKFKITIQDGEGEGKKDSVEMYLDTDDSMLLDHVCVRYDKGCSLYLNSLAKNQTRLKVKVTVSIATNDHEDRVLLKGLGVSLINTSAYHNFKQQMELRDSN	1189

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2157g00008	1189	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	352	608	IPR027417	-
	Gabi2157g00008	1189	SMART	till_3	172	319	IPR000157	GO:0007165
	Gabi2157g00008	1189	SUPERFAMILY	Toll/Interleukin receptor TIR domain	167	321	IPR035897	-
	Gabi2157g00008	1189	Gene3D	-	514	598	IPR042197	-
	Gabi2157g00008	1189	Gene3D	-	348	509	IPR027417	-
	Gabi2157g00008	1189	SUPERFAMILY	L domain-like	706	971	-	-
	Gabi2157g00008	1189	FunFam	Disease resistance protein (TIR-NBS-LRR class)	169	347	-	-
	Gabi2157g00008	1189	PRINTS	Disease resistance protein signature	549	563	-	-
	Gabi2157g00008	1189	PRINTS	Disease resistance protein signature	457	471	-	-
	Gabi2157g00008	1189	PRINTS	Disease resistance protein signature	381	396	-	-
	Gabi2157g00008	1189	PRINTS	Disease resistance protein signature	841	857	-	-
	Gabi2157g00008	1189	ProSiteProfiles	TIR domain profile.	171	345	IPR000157	GO:0007165
	Gabi2157g00008	1189	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	173	884	IPR044974	GO:0006952
	Gabi2157g00008	1189	SUPERFAMILY	"Winged helix" DNA-binding domain	585	672	IPR036390	-
	Gabi2157g00008	1189	Gene3D	-	170	347	IPR035897	-
	Gabi2157g00008	1189	Pfam	TIR domain	173	360	IPR000157	GO:0007165
	Gabi2157g00008	1189	Gene3D	Ribonuclease Inhibitor	864	1003	IPR032675	-
	Gabi2157g00008	1189	Gene3D	Ribonuclease Inhibitor	701	863	IPR032675	-
	Gabi2157g00008	1189	Pfam	NB-ARC domain	368	586	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2157g00008	Gabi-Chr2157	141387	165450	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2157g00008	169	978	WRKY Transcription Factor Family	AT4G12020	31.566	8.77e-91	320

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2157g00008	-		-	aprc:113850949	1188.71