Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2157g00007 ATGCAGCTCGACCTCTCCGATAACGAATTCGAAGGTTCAATCCCAGAGGACACCGGCGACCTCGTGTCACTCTCCGGCACGCTTAACCTCTCGTTCAATCACTTTTCCGGCAGAATTCCGAAGTCTCTGGGGAAATTACCGGCGATGGTGAGCTTCGACCTCCGGAACAACAACCTAACCGGCGAGATTCCCCAAACGGGGTCGTTTTCAAACCAGGGTCCAACAGCATTCCTCGGTAACCCGAACCTTTGCGGGTTTCCTCTTCGAAAACAATGCACCGGTTCAGACCGGGTTGGTCCCGGTTCATCCTCCCGCGAACCGGGTAAGTTACCCGGTTCGAAAGGTCTGAGTCCCGGTTTGATAATTTTAATCTCAGCGGGTGATGCAGCTGGGGTTGCTTTAGTTGGGCTTGTTATTGTGTATGTTTATTGGAAGAAGAAGGATGATTCAAATGCGTGTAGCTGCACTGGGAAGAGCAAGTTTGGTGGGAATGATGATGAGAAAGAAAATGTGTGTGCGTGTGCGAGTGCGTTCCCATGTATCAATGGGTTGAAGAATGAGGATGATGAGTATGAGGTAGAGGTAGATGGGGAAGGGAAAGGTGAAGGGGAATTGGTGAACATTGATAAAGGTTTGAGTTTTGAGCTTGATGAGCTTTTAAGGTCTTCTGCATATGTGTTGGGGAAGAGTGGGTTGGGGATTGTGTATAAGGTGGTGCTTGCAAATGGGGTGCCTGTGGCTGTTAGGAGATTAGGGGAGGGTGGAGAACATAGGTACAAGGAGTTTGCTGCAGAGGTGCATGCCATTGGGAAGGTTAAGCACCCTAACATTGTGAGGTTAAGAGCTTATTATTGGGCTCATGATGAGAAGCTTATCATCAGTGATTTCATCTCCAATGGCAATTTGGCCAATGCCCTTAGAGGGAGAAGTGGCCAACCATTTCAGAACCTTTCATGGTCCACCAGATTGAGAATCGCCAAAGGAACAGCCAGGGGCTTGGGTTATCTTCATGAATGCAGTCCAAGAAAATTCGTCCATGGTGACATCAAACCCTCCAATATCCTACTTGACAACGACTTCCAGCCCTACATTTCTGATTTTGGTCTTAACAGGCTGATCAGCATCACCGGTAACAACCCCTCCACAGGTGGCTTAATGGGTGGAGCTCTTCCTTACATGAAGTCATCACAAAGAGAGAGAACCAACAATTACAAAGCCCCTGAGGCTTCTGTCCCTGGGTGCAGACCCACCCAGAAATGGGACGTGTATTCATTTGGTGTTGTTTTGCTTGAATTGCTAACTGGGAAGTCACCAGATTCATCTCCCACCACATCAACTTCTATGGAAGTCCCTGACTTAGTAAGGTGGGTAAGAAAAGGGTTTGAACAAGAAAGTCCATTATCTGAAATGGTCGATCCATCACTGCTTCAAGAAGTGCGTGTTAAGAAAGAGGTACTTGCTGTGTTTCATGTTGCACTAGCATGCACTGAAGGAGACCCTGAAATCCGGCCTAAAATGAAAACTGTCTCTGAAAATCTTGAAAGGATTGGAACATAA 1557 0.474 MQLDLSDNEFEGSIPEDTGDLVSLSGTLNLSFNHFSGRIPKSLGKLPAMVSFDLRNNNLTGEIPQTGSFSNQGPTAFLGNPNLCGFPLRKQCTGSDRVGPGSSSREPGKLPGSKGLSPGLIILISAGDAAGVALVGLVIVYVYWKKKDDSNACSCTGKSKFGGNDDEKENVCACASAFPCINGLKNEDDEYEVEVDGEGKGEGELVNIDKGLSFELDELLRSSAYVLGKSGLGIVYKVVLANGVPVAVRRLGEGGEHRYKEFAAEVHAIGKVKHPNIVRLRAYYWAHDEKLIISDFISNGNLANALRGRSGQPFQNLSWSTRLRIAKGTARGLGYLHECSPRKFVHGDIKPSNILLDNDFQPYISDFGLNRLISITGNNPSTGGLMGGALPYMKSSQRERTNNYKAPEASVPGCRPTQKWDVYSFGVVLLELLTGKSPDSSPTTSTSMEVPDLVRWVRKGFEQESPLSEMVDPSLLQEVRVKKEVLAVFHVALACTEGDPEIRPKMKTVSENLERIGT 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2157g00007 518 SMART serkin_6 221 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2157g00007 518 Gene3D Phosphorylase Kinase; domain 1 214 296 - -
Gabi2157g00007 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 344 356 IPR008271 GO:0004672|GO:0006468
Gabi2157g00007 518 Gene3D Transferase(Phosphotransferase) domain 1 297 518 - -
Gabi2157g00007 518 FunFam Leucine-rich repeat receptor-like protein kinase 204 296 - -
Gabi2157g00007 518 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 2 516 IPR046959 -
Gabi2157g00007 518 Gene3D Ribonuclease Inhibitor 1 98 IPR032675 -
Gabi2157g00007 518 SUPERFAMILY Protein kinase-like (PK-like) 226 513 IPR011009 -
Gabi2157g00007 518 CDD STKc_IRAK 227 516 - -
Gabi2157g00007 518 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 297 518 - -
Gabi2157g00007 518 FunFam Leucine-rich repeat receptor-like protein kinase 1 94 - -
Gabi2157g00007 518 Pfam Protein kinase domain 226 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2157g00007 518 ProSiteProfiles Protein kinase domain profile. 221 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2157g00007 518 SUPERFAMILY L domain-like 3 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2157g00007 Gabi-Chr2157 127055 130358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2157g00007 2 516 Receptor kinase-like Gene Family AT1G67510 67.675 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi2157g00007 Pkinase 8e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2157g00007 - - gmx:100793996 835.484