Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2155g00027 ATGTCCGAAGCAAGCAAGTCCTCAGCTTGTGCTGATGGTGCCAATATTGATCTTGGTGCTAGCTTACTCCTCACAAGCAAGTACACCAAGATATGGCGTAAAAGCTTATACATAGGATTCCTCATCTCTCTGAAGAAGCCAACAACTTCCAGTGGCAGCCATGAATCTCCACTTTCTTCAGTACCATACACATCATTGCCTCCATCGGAGCCTCCTGCTAGAACCTCCTCTGCCAAATCTTTTGTTGCAATTGAAATAGTCTCTGATGCCGAAGAGGAGAAAGAAGAAGCTGTAGAACATGAGAGCTCTACTGATAATGGGAATCTTAGTATCAACAAGACCCCTTTTGCAATTCATGGAAGAAGCTTGTCTAGCTTTTTATTGAATAGCTGCAAACGCAATTGTTACACAATTTTAATGCTGTTGATCTCAGCAGGATTGTCCTTTGCCACAGAGTTCAAGCAGGAGGGAACTAGATATGGTTGGCATGATGGTGTTGCCATAGTTTTTGCTGTTTTCCTGCTGATTGCATTCTCTTCAATAGCAAACTTCTGGCGTGAAAGACAAATTGTGAAATTGGCAAAGGGAAAGGACAAGTCTGAGATGCAAAGCGCAATGAGTTATAATCCTGAAAAGATAGACCTATTGGAGGGACTAATTGAGAAGCCAATTTCTTACATTGACAAGTCTGCTCTTTTTATCTCTGTGCTGGTTGCACTTGTGGTGTTCATTCGCCTAATTTGTAAAAAAGATGCGGACAGTGGTGAGTTGCCAGAAATCAAGGGGAAGGTCACAATTGGTTTGCTGATGGAAGCCCTTGAAAGAATTTTTTGGAGACCACAAGGAAGGATTTCCATTTTGACAGGTTTTGTTACTGTTGCCATACTATGTGTGCAACATGGAATGCCACTTATGGTTACAATTTCTCTCAATTACCAGATTGATAAGGTAGAGCAAAACCATGATGCAGTTCTTAACGATTTATCAGCTTGTACAACAATGGGGTTGGTAACTGTCATCTGCATTGATGTGTCAGGTGGGCTCATATCAATGGAGGTTAGCAGAATCTGGATGGGGGAGAAAGATATCAGCAAGGTTGAAGGATCAGAAATAGATCAAACAGTACTTGACTTGCTTAAACAAGGAGTTTCTCTTTCTCACATGTCCAATTCACTTATTTCTTGGCCAGAAAAAACATTGGAAGTGAACATGCAATCTTTCACAGAAAAATTTGACATTCTAAAGCAGAAATTTGACAAAGAGGGCAGCGGAGTTTTGGTGAGAGAAGTTGGTGACAATAAACAAGTTCTGCACTTGCACTGGAGTGGGGCCGCATCCACAATATTGGAAATGTGTTCACTATACTATGATAGTAAAGGGGAACGCCATGCCATGGAAAATCAGAAAATCAAATTTGGGCAGGTGATTAAAGAGATGGAGGATAGTGGCCTCAAGCCTATTGCATTTGCTTATAGACAACCAAATGAGGGAGAACTTAAGCAAGATGAGGGAGAAATTAAGCAAGATGAACTGATCTTGTTAGGACTGATAGGTATCAAAGAAGAATCGACAAAATTAGATTTGGATGATCTCAGAAATACTGGAATAAAGATCAAATTGGTCTCGGAGGATGACATCATGGTAGTGAGAGACAAAGCTTGTGAACTAGGACTAGAAGTACCAGAAGATGTTCTTGTGCTTGAAGGAAAAGAACTTCAAGATTCGAATACCAGTGCTAGATTAGATAAGGTGGGTAAAGCCCTTGTAATGGTGAGTTTCAGTCCTGAAGACAAGCTTCTCATGGTACAATGCCTGAAACAAAAAGGTGATGTGGTTGCATTTGTTGGAAGAAGGTTGATGACTAGTCATCCTGCAATTCTAAAGGTAGCGGATGTTGGGATTGTTCATGATCCTCTGAGCAGTACAGTGGATAGAGAGAGTTCCAGTATATCTATCAAAAGTTTCAGTGCATTGATGCCAATTGTGAGGGCTGGCAGAAGTAAATATCACAATATTCAGAAGTTCATTCAACTACAGCAGACATCTATCATATCAGGGTTACTCATAACCTTGATTACAACAGTAACTACTGGAAAATCTCCCCTTACAGCAATCCAATTGATTTGGGTGAATGTGCTAATGTGCCTTCTGGGTGGCCTAATGATGGTAATGGAGTTAAATAGCGCGGAAGAGCTTGCCAATCCACCATCTGATAGGAATCAGCCAATTATAACCAAAGAAATCTGGAAGAACATAGTTATTCAGGTCTTATATCAGGCTTCTGTATCCATGATACTTGAATTTGGGGGACAAGTTACTGGGAGCGAAAAAGAAGTTAGGAAAACCATGATCTTCAACACATTCCTATTGTGCCAGCTCTTCAATCAGCTCAACACCATGCAAATGTTGAAAACGGAAGTTTTGAAGGTTGTTCTTCAGAGCTACTGTTTCTTGGTGGCTTTAGGTTTTTGTTTTCTTGTGCAGGTGCTGGTGATTGAGTATTTAAAAGGCCTAGCAAATTGCATGCGGCTGAATGCTACTCAATGGGCTATCTGTGTCCTGGTTGGTGCTCTTTCATGGGTGTTTGAATTGGCCCTGAAGATTCTTCTATATATTCTCAGCACTAATTCTGCTTCAGAACCAAATACTTTTCCCTTTGTACTCTCCAGTCATCCACCTTGGTTCTATGTTTCTCGGGGTTTTCCAATTCTGATGCTCCTTTTGTTCCCTGTAGGACTAATATTTAACCAAATGGGCATGACATTTCGTTTGTGGCAGATCAACTAG 2787 0.4087 MSEASKSSACADGANIDLGASLLLTSKYTKIWRKSLYIGFLISLKKPTTSSGSHESPLSSVPYTSLPPSEPPARTSSAKSFVAIEIVSDAEEEKEEAVEHESSTDNGNLSINKTPFAIHGRSLSSFLLNSCKRNCYTILMLLISAGLSFATEFKQEGTRYGWHDGVAIVFAVFLLIAFSSIANFWRERQIVKLAKGKDKSEMQSAMSYNPEKIDLLEGLIEKPISYIDKSALFISVLVALVVFIRLICKKDADSGELPEIKGKVTIGLLMEALERIFWRPQGRISILTGFVTVAILCVQHGMPLMVTISLNYQIDKVEQNHDAVLNDLSACTTMGLVTVICIDVSGGLISMEVSRIWMGEKDISKVEGSEIDQTVLDLLKQGVSLSHMSNSLISWPEKTLEVNMQSFTEKFDILKQKFDKEGSGVLVREVGDNKQVLHLHWSGAASTILEMCSLYYDSKGERHAMENQKIKFGQVIKEMEDSGLKPIAFAYRQPNEGELKQDEGEIKQDELILLGLIGIKEESTKLDLDDLRNTGIKIKLVSEDDIMVVRDKACELGLEVPEDVLVLEGKELQDSNTSARLDKVGKALVMVSFSPEDKLLMVQCLKQKGDVVAFVGRRLMTSHPAILKVADVGIVHDPLSSTVDRESSSISIKSFSALMPIVRAGRSKYHNIQKFIQLQQTSIISGLLITLITTVTTGKSPLTAIQLIWVNVLMCLLGGLMMVMELNSAEELANPPSDRNQPIITKEIWKNIVIQVLYQASVSMILEFGGQVTGSEKEVRKTMIFNTFLLCQLFNQLNTMQMLKTEVLKVVLQSYCFLVALGFCFLVQVLVIEYLKGLANCMRLNATQWAICVLVGALSWVFELALKILLYILSTNSASEPNTFPFVLSSHPPWFYVSRGFPILMLLLFPVGLIFNQMGMTFRLWQIN 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2155g00027 928 Pfam Cation transporting ATPase, C-terminus 700 868 IPR006068 -
Gabi2155g00027 928 MobiDBLite consensus disorder prediction 48 76 - -
Gabi2155g00027 928 MobiDBLite consensus disorder prediction 48 63 - -
Gabi2155g00027 928 SUPERFAMILY Calcium ATPase, transmembrane domain M 137 871 IPR023298 -
Gabi2155g00027 928 PANTHER CATION TRANSPORTING ATPASE 202 868 - -
Gabi2155g00027 928 SUPERFAMILY HAD-like 470 718 IPR036412 -
Gabi2155g00027 928 Gene3D - 353 517 IPR023299 GO:0000166
Gabi2155g00027 928 Gene3D - 518 654 IPR023214 -
Gabi2155g00027 928 Gene3D - 655 875 - -
Gabi2155g00027 928 Gene3D - 135 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2155g00027 Gabi-Chr2155 162352 165829 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2155g00027 292 860 Primary Pumps ATPases AT3G22910 35.927 2.89e-110 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2155g00027 K01537 - gmx:102661547 818.535