Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2155g00020 ATGCTCCCTCCACGACAGCAGAACCGGGTTGGAGGATTACAAACATCTTTGTCTCTAGTTTCTTCAGATCCTCGTCTTTCTCCGGAGGAACCTAGATCAAACTCTGACAATCTCCGTGAATCTCCTACTGAAAGTGCGAGTTCTCGAGAAACTTGGCCTACTGCCGATGCAATCGCTGCAAAGAAGATGGAGAATGGAAAAGCTGAGAACGATTGCCCTGATCAGTCGGTTATTCGTCGTGTTTCTAGTGCAGACAAAATTAGTCTCCAGGACATTGCAAGAGAAAGAGTTGATATAATATGTGAAAAAATGCATCGTCTACCTGATGAATTTCTAGAAGAGCTGAAAAATGGACTTCGAGTTATCCTTGAGGGAGGGAATGGCTCCCAGCATAGGGAAGAATTTTTCATTTTGCAGAAGCATGTTCAGAGTAGAGCTGATTTAACAGCCAAGACATTGATAAGATCACACCGTGTGCAGCTTGAAATCCTTGTTGCCATAAATACTGGAATTCAGGGATTTTTACATCCTAGCATCAGTCTATCGCAGACTTCACTGATTGAGATATTTGTGTATAAGAGATGCAGAAACATAGCTTGCCAAAACCAGCTTCCAGCTGATGATTGTACTTGTGAAACATGCACCAATAGCAATGGTTTCTGCAATCTTTGCATGTGCGTTATATGCAGCAAGTTTGACTTTGAAGTGAATACATGCCGATGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGTGAGCAACTTATTTGCATGGGCCCTTCTGTGAAGACTGGAGCAGGACCAAGTGAAATGGTTTTCAGGTGTCAAGCATGCAATAGGACTTCAGAACTGTTGGGTTGGGTTAAAGATGTCTTCCAGCATTGTGCCCCATCATGGGAAGGAGAGGCCTTAATGAGGGAACTTGATTTTGTTAGCAGGATCTTTCACGGTAGTAAAGACCCACGAGGGAGGAAACTCTTTTGGAAATGTGATGATCTCAAGGAAAAACTGAAAAGCGGAAAAGTGGAATCTAAGGCTGCATGCAGGGCAATATTGATGGTTTTTCAAGAGCTTGAGGTGGACTCTCCAAAGAGCCTGGAAAATGCAGAAAGTGGAAGGCTGATTGCCCCACAGGAGGCATGCAATAGAATTGCTGAGGTGGTGCACGAGGCTATAAGAAAGATGGAAATAGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCTTGGCTCTTGAGGCTTGTGAACGTGAATTAGCAGACAAGGCCAGAGAAGCAGGAGAACTCAAGATGGACAGGCAAAAAAAGAAGATACAGATTGAAGAACTAGAGAAAATTGTGAGGCTGAAAAATGCAGAGGCTGATATGTTCCAATTGAAGGCTAATGAAGCTAAGCGAGAGGCCGAGAGGCTCCAAAGGATTGCTCTTGCCAAGTCAGATAAATCAGAGGAAGAATATACTAGCAACTATTTGAAACAAAGATTAAGTGAGGCTGAGGCTGAGAAGCAATATCTGTATGAGAAGATCAAATTGCAGGAGAGTTCTCGTGTATCACAGAGCAGTAGTGGTGGTGACCCCTCTTCAATGCTGATGTATTCCAAAATCCATGATCTTCTCTATAGTGTTCCTCCCAAGGCTGACAGTCAATCTAATGAGTGCCACCCCTTCCGAACAAACCCATGA 1704 0.436 MLPPRQQNRVGGLQTSLSLVSSDPRLSPEEPRSNSDNLRESPTESASSRETWPTADAIAAKKMENGKAENDCPDQSVIRRVSSADKISLQDIARERVDIICEKMHRLPDEFLEELKNGLRVILEGGNGSQHREEFFILQKHVQSRADLTAKTLIRSHRVQLEILVAINTGIQGFLHPSISLSQTSLIEIFVYKRCRNIACQNQLPADDCTCETCTNSNGFCNLCMCVICSKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPSVKTGAGPSEMVFRCQACNRTSELLGWVKDVFQHCAPSWEGEALMRELDFVSRIFHGSKDPRGRKLFWKCDDLKEKLKSGKVESKAACRAILMVFQELEVDSPKSLENAESGRLIAPQEACNRIAEVVHEAIRKMEIVADEKMRMFKKARLALEACERELADKAREAGELKMDRQKKKIQIEELEKIVRLKNAEADMFQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKLQESSRVSQSSSGGDPSSMLMYSKIHDLLYSVPPKADSQSNECHPFRTNP 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2155g00020 567 Pfam Coiled-coil region of Oberon 413 546 IPR032535 -
Gabi2155g00020 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 232 252 IPR004082 -
Gabi2155g00020 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 145 160 IPR004082 -
Gabi2155g00020 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 448 468 IPR004082 -
Gabi2155g00020 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 103 125 IPR004082 -
Gabi2155g00020 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 160 175 IPR004082 -
Gabi2155g00020 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 186 207 IPR004082 -
Gabi2155g00020 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 305 324 IPR004082 -
Gabi2155g00020 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 487 509 IPR004082 -
Gabi2155g00020 567 MobiDBLite consensus disorder prediction 1 52 - -
Gabi2155g00020 567 PIRSF UCP025218 1 553 - -
Gabi2155g00020 567 SMART PHD_3 225 285 IPR001965 -
Gabi2155g00020 567 Pfam PHD - plant homeodomain finger protein 195 318 IPR032881 -
Gabi2155g00020 567 Coils Coil 412 488 - -
Gabi2155g00020 567 MobiDBLite consensus disorder prediction 1 23 - -
Gabi2155g00020 567 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 27 548 IPR004082 -
Gabi2155g00020 567 MobiDBLite consensus disorder prediction 38 52 - -
Gabi2155g00020 567 CDD PHD_OBE1_like 225 284 IPR047578 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2155g00020 Gabi-Chr2155 137787 141046 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2155g00020 195 297 PHD Gene Family AT5G57380 31.731 5.45e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2155g00020 - - gmx:100795450 1077.39