Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2155g00018 ATGTCTGTGAATCGAAGACTTTCTGGTTCAAATGGAAGATTGCCACCAAGTATGAAGTCTTGGAAGGCAAATGAGCCTCTGCATGAGTCTAATTCTTCTAAAACATGTAGAAGGAAGCCGTTGCTCCTCTGGGTTTTTGGGTTTGTTGCTATAGGGAGTGTTTGGTTTATCTTGAGTTTCAATAGTAACGAAGCAGCTTGTGAAGATAGAGAAAGAATATTGCTTCAACGTTACAATGTCAGTAGGAAGCAGCTTCATGCTTTGGCTTCCTTGTTCTCTGGATCAGATCAGATTTTATCATCCAACTGTATTGATGAAAGAAGACTTCAAATGCTGTTAAGCAGTGGCATAGTGAGCACTCCACAGTTAATTTGTCCAGAGAATCAGGAGTTACAAAAGGAGCATAGATGTGTTGCAGAGATTGTAGAACCTGTTGAACAATGCCCAATTGTCGACGATAATGTCCAGACAAGGCTTGAATTATCATTCGTATTGAAAAAATATCTATCATTGACCTCACACTCTGCACTTTCGTCCAATTTGGTTAATTGTTTGCTTTGTGGAAAGAACATTTTGCAGTCATTTAAACTGAGGGTCTGTGCAATTAAGGATCATGTGAGTTCATCTAATTCGGTTAAAGGATGCTGGTGGATCCTTATTGGAATTATAATGTCCTGCAAGTTGTCTGGCTTCTATTTACTATGGAGGAGTCAAAAGCAGAAGCTAGTTTGGGGGCATCCAGCTTCTCAACAAAAGCGGCTGCAACATTCTGTGCAGGGTCCCTTAAAGAGTGCTGGGAGGTGGAGGAAAAAGTTGCTAATTATATTTGTGTCACTTGGAATAGTTGTGTCCGTTTGGTTATTCTGGCACCTGAATATGAACATTGTGCAGAGAAGAGAAGAAATGCTTGCCAATATGTGTGATGAGCGAGCCCGTATGCTGCAAGATCAGTTTAATGTAAGCATGAATCATGTTCATGCTCTGGCTATTCTTGTATCTACCTTTCACCACGGAAAACATCCTTCTGCAATTGACCAGAAAATTTTTGGGGAATATACAGAGAGTACAGCATTTGAGAGACCACTTACTAGTGGTGTTGCTTATGCTTTGAAAGTTCTCCATTCTGATAGGATGCATTTTGAGAAGCAGCACGGGTGGACAATTAAGAAAATGGAAACAGAGAATGAGACACTAGTCCAAGATTGTATTCCAGAAAATTTGGATCCGGCACCCATTCAAGATGAATATGCTCCGGTGATATTCGCTCAAGAAACAGTTTCCCATATTGTATCAATTGACATGATGTCAGGGAAGGAGGATCGTGAGAATATTTTGCGAGCAAGGGCATCTGGAAAGGGGGTTCTGACATCCCCTTTTAAATTACTAAAGTCCAATCACCTGGGTGTTGTACTTACATTTGCTGTCTTTGAGACTAATCTTCCTCCAGATGCTACACCAGAGCAGCGTATTGAAGCTACTGTGGGGTATCTGGGTGCATCTTATGATGTTCCATCACTGGTAGACAAGCTTCTGCACCAACTTGCCAGCAAGCAAACCATTGTTGTAAATGTTTATGACATAACTAATGCATCTGCACCCATCACAATGTATGGTACTGATGTTGCTGATACTGGCCTACTACGCATAAGCAGCCTAGATTTTGGGGATCCGCTACGAAAACATGAGATGCACTGCAGGTTCAAGCAAAGGCCTCCATTACCTTGGACGGCAATCAATGCATCTGTTGGGGTACTTGTTATTACTTTGCTTCTGGGTCATATTTTTTATGCAGCAATAAATCGAATAGCAAAAGTAGAGGATGACTATCGAAAAATGAGAGAGCTGAAAGTTCGTGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCGACAGTTTCACATGAGATCAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGACACTGACCTTGATGAAAACCAGATGGATTTTGCCCAAACTGCCCATAGGAGTGGTAAAGATCTTATATCAGTCATAAATGAGGTTCTTGATCAGGCAAAGATCGAGGCAGGCAAGCTTGAACTTGAAGCTGTAGCTTTTGATCCGCATGCTATTCTAGATGAAGTTCTATCACTTTTCTCTGGAAAATCTTATGAAAAAGGAATTGAGTTGGCTGTTTATGCATCCAATCAAGTACCCAAAGTTGTAACTGGCGATCCTAAACGGTTCCGGCAAACAATTACTAATCTTGTTGGCAATTCACTTAAGTTCACCCATGATAAAGGACATGTATTTGTCTCGGTTCATCTGGCGAATGAAGTGAAGAACCCACTTCATATTATGGACGCAGTATTGAGAGAAGGCTTAAACTTGGATCAAGACATGCCAGCCAGAACATATAATACGTTAAGCGGGCTCCCTGTAGGCAACAGATGGAAAAGCTGGGCAAACTTTAAAAAGTTTAGTATAAATTTGATGGATAAGCCTGAAATTATTCAACTACTAGTAACAGTTGAGGACACAGGTATAGGAATTCCTGCAGATGCACAGAGCCGCATATTTACACCTTTTATGCAGGCTGATAGTTCCACTTCTCGAACATATGGGGGAACTGGAATAGGACTGAGTATTAGTAAATGTCTAGTTGAGCTTATGGGAGGAGAAATTGGTTTTGTAAGTGAGCCTGGAATTGGAAGTACTTTTTCATTTACAGGAACTTTCAGAAAAGGAGAAACCACATCTCTGGATGCAAAGTGGCAGAAGCACAATCTTTTTGTTCCACAGCTCCAAGGATTGAGAGCATTAGTGATAGATGGAAGTAAAATCCGAGCTGAGGTCACAAGATATCATCTGCAGAGGTTGGGGATGTCTGTGGATGTAACTTTCAGTCTGAAATCTGCATGCTCTTGTCTATCTAGTACTTGCAACATGAGTATGTCAACACAGTTCGCCATGATTCTTATAGACAAGGATGCTTGGGATAAGGAAAGTAGTATCTTATACACAATCAAGAATCAAAGACAGAATGGCATCAAAGGGGACCCAATAAACTTTCCAAGGATTTTTCTCCTGGCCACCCACCTTAGCCCCAATGAACGTGATGAACTCAAGTCCATTGGAATCATAGATGATATACTAATGAAGCCTCTTTGGCTTACTGTTTTGATTCGCTGCTGCAGAGAATCCCTTGGAACTGAAAAAAGGCAAATAAATAGGAAGAAAGTATCCAAACTTGGGAATTTATTAATACACAAACAAATTTTGGTGGTTGATGATAATGCAGTGAACAGAAAAGTTGCAGAAGGTGTTCTGCAGAAATATGGGGCAATAGTTACCTGTGTGGAGAGTGGCAGGGCTGCTCTAAAGATGCTCAAACCACCACATAATTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGATGGTTTTGAAGTGACAAGGCAAATCCGCCGTTTAGAGAGTGAGGTAAATGAGAAAATTGCATGTGGGCAAGAATCTGCTGAGACGTTTGGTAACATCTCTCATTGGCACACTCGAATACTAGCAATGACAGCTGATGGAACTCAGGCTTCAAATGAAGAGTGCAGGAAGAGTGGGATGGATGATTATGTGTCAAAGCCATTTGAAGAAGAGCAGCTCTATATGGCAGTGGCACGAATCTTCAAGTCTGGTTCATAG 3681 0.4116 MSVNRRLSGSNGRLPPSMKSWKANEPLHESNSSKTCRRKPLLLWVFGFVAIGSVWFILSFNSNEAACEDRERILLQRYNVSRKQLHALASLFSGSDQILSSNCIDERRLQMLLSSGIVSTPQLICPENQELQKEHRCVAEIVEPVEQCPIVDDNVQTRLELSFVLKKYLSLTSHSALSSNLVNCLLCGKNILQSFKLRVCAIKDHVSSSNSVKGCWWILIGIIMSCKLSGFYLLWRSQKQKLVWGHPASQQKRLQHSVQGPLKSAGRWRKKLLIIFVSLGIVVSVWLFWHLNMNIVQRREEMLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKIFGEYTESTAFERPLTSGVAYALKVLHSDRMHFEKQHGWTIKKMETENETLVQDCIPENLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVFETNLPPDATPEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDITNASAPITMYGTDVADTGLLRISSLDFGDPLRKHEMHCRFKQRPPLPWTAINASVGVLVITLLLGHIFYAAINRIAKVEDDYRKMRELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDENQMDFAQTAHRSGKDLISVINEVLDQAKIEAGKLELEAVAFDPHAILDEVLSLFSGKSYEKGIELAVYASNQVPKVVTGDPKRFRQTITNLVGNSLKFTHDKGHVFVSVHLANEVKNPLHIMDAVLREGLNLDQDMPARTYNTLSGLPVGNRWKSWANFKKFSINLMDKPEIIQLLVTVEDTGIGIPADAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVELMGGEIGFVSEPGIGSTFSFTGTFRKGETTSLDAKWQKHNLFVPQLQGLRALVIDGSKIRAEVTRYHLQRLGMSVDVTFSLKSACSCLSSTCNMSMSTQFAMILIDKDAWDKESSILYTIKNQRQNGIKGDPINFPRIFLLATHLSPNERDELKSIGIIDDILMKPLWLTVLIRCCRESLGTEKRQINRKKVSKLGNLLIHKQILVVDDNAVNRKVAEGVLQKYGAIVTCVESGRAALKMLKPPHNFDACFMDLQMPEMDGFEVTRQIRRLESEVNEKIACGQESAETFGNISHWHTRILAMTADGTQASNEECRKSGMDDYVSKPFEEEQLYMAVARIFKSGS 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2155g00018 1226 FunFam Histidine kinase 4 597 688 - -
Gabi2155g00018 1226 Pfam CHASE domain 343 537 IPR006189 -
Gabi2155g00018 1226 ProSiteProfiles Response regulatory domain profile. 1085 1222 IPR001789 GO:0000160
Gabi2155g00018 1226 Gene3D - 1080 1225 - -
Gabi2155g00018 1226 SMART CHASE_2 340 539 IPR006189 -
Gabi2155g00018 1226 CDD REC_hyHK_CKI1_RcsC-like 1086 1218 - -
Gabi2155g00018 1226 SMART HKATPase_4 737 908 IPR003594 -
Gabi2155g00018 1226 MobiDBLite consensus disorder prediction 1 33 - -
Gabi2155g00018 1226 Pfam His Kinase A (phospho-acceptor) domain 625 690 IPR003661 GO:0000155|GO:0007165
Gabi2155g00018 1226 FunFam Histidine kinase 4 344 571 - -
Gabi2155g00018 1226 SUPERFAMILY CheY-like 927 1062 IPR011006 -
Gabi2155g00018 1226 CDD HisKA 625 686 IPR003661 GO:0000155|GO:0007165
Gabi2155g00018 1226 Gene3D - 62 95 - -
Gabi2155g00018 1226 Gene3D - 291 343 - -
Gabi2155g00018 1226 Gene3D CHASE domain 344 571 IPR042240 -
Gabi2155g00018 1226 ProSiteProfiles CHASE domain profile. 340 564 IPR006189 -
Gabi2155g00018 1226 Gene3D - 596 688 - -
Gabi2155g00018 1226 SUPERFAMILY CheY-like 1084 1222 IPR011006 -
Gabi2155g00018 1226 MobiDBLite consensus disorder prediction 1 17 - -
Gabi2155g00018 1226 PRINTS Bacterial sensor protein C-terminal signature 851 861 IPR004358 GO:0016310|GO:0016772
Gabi2155g00018 1226 PRINTS Bacterial sensor protein C-terminal signature 833 847 IPR004358 GO:0016310|GO:0016772
Gabi2155g00018 1226 PRINTS Bacterial sensor protein C-terminal signature 868 886 IPR004358 GO:0016310|GO:0016772
Gabi2155g00018 1226 PRINTS Bacterial sensor protein C-terminal signature 892 905 IPR004358 GO:0016310|GO:0016772
Gabi2155g00018 1226 SMART REC_2 1084 1218 IPR001789 GO:0000160
Gabi2155g00018 1226 Gene3D - 689 909 IPR036890 -
Gabi2155g00018 1226 Gene3D - 927 1076 - -
Gabi2155g00018 1226 SMART HisKA_10 625 690 IPR003661 GO:0000155|GO:0007165
Gabi2155g00018 1226 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 737 903 IPR003594 -
Gabi2155g00018 1226 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 612 691 IPR036097 GO:0000155|GO:0007165
Gabi2155g00018 1226 ProSiteProfiles Histidine kinase domain profile. 632 908 IPR005467 -
Gabi2155g00018 1226 Coils Coil 602 622 - -
Gabi2155g00018 1226 Pfam Response regulator receiver domain 1086 1218 IPR001789 GO:0000160
Gabi2155g00018 1226 CDD HATPase_EvgS-ArcB-TorS-like 742 903 - -
Gabi2155g00018 1226 ProSiteProfiles Response regulatory domain profile. 932 1062 IPR001789 GO:0000160
Gabi2155g00018 1226 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 679 903 IPR036890 -
Gabi2155g00018 1226 PANTHER TWO-COMPONENT HISTIDINE KINASE 224 1215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2155g00018 Gabi-Chr2155 116198 126176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2155g00018 66 1223 Miscellaneous Gene Families AT5G35750 61.135 0.0 1380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi2155g00018 CHASE 1.3e-33 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2155g00018 K14489 - gmx:100805107 2057.34