Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2155g00008 ATGTCTTTGCTTGTAGATAAAATGCAATCAGATAATGGGAAGTTATTCATTGGTGGAATTTCATGGGACACAAATGAAGAGCGACTCAGGGAGTATTTCAGTGCGTATGGAGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACAGGTAGAGCTCGTGGATTTGGTTTTGTTGTTTTTTCCGACCCAGCTGTTGCAGAAATAGTCATAAAAGAGAAGCACAACATTGACGGAAGGATGGTTGAGGCAAAGAAAGCAGTTCCCAGAGATGATCAGAACATACTGAGTAGAAACAGTGGCAGCATCCATGGTTCTCCTGGTCCAGGTCGCACAAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTGACAGAGGGTGATTTCAAGCAGTACTTTGATCAGTTTGGGACTATAACAGATGTTGTAGTAATGTATGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATCACTTATGATTCTGAGGAGGCTGTTGACAAGGTCTTACATAGGACGTTTCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCGCCAGGACCAAGCCGCACTGCACTTGGTGGATATAACTATGGTCTGAGTAGGGTCAATAGTTTCTTAAATGGCTTCACCCAAGGTTACACTCCAAGTACTGTTGGAGGCTATGGGCTTCGGGTGGATGGTAGATTCAGTCCTGTTGCTGGAGGTCGAAATGGATTTGCTCCATTTGGATCTGGTTATGGAATGAGTATGAATTTCGAACCAGGTTTGAGTGCTGGATTTGGGGGTAATGCAAATTTCAGTAGCAATCTTAACTATGGTCGGGGATTGAATCCTTATTTTATTGGCAACTCCAATAGGTTTGGCAGTCCTGTTGGATATGACAGTGGTAATGGAGGAAACAATTCTTTCTTCAGTTCTGTGACTCGAAATTTGTGGGGGAATGGTGGCCTCAGTTATGGAACAAGTTCTGCAAATTCCAGTGCATACATTGGATCAGGGAGTGGGAGTGTTGGAGGAAACACATTTGGCAATACTGGAGTCAACTGGGGTTCTTCAGCAATTTCTGGGCATGGGGGAGGGAACAATGTGTCTCAGAGTGGTGGCAACCTTGGATATGGAGGTCGCGACAACAGTTTTGGTTTGGGGACTGGAGGGTATGGAAGAAGCAGTGGTACCACTTTTGCCCCAACATCTTCATACTCTGCAACAAATGGCGGTGTTGATGGGGATCTTGCTGATTTTTACAATAACAGTTCAGTGTATGGGGATCCCACTTGGCGATCTTCAAATTCTGAGCAAGATGGATCTGGTCCCTTCGGTTATGGACTTGGTGGTGCAGCTTCGGATGTTTCTGCCAAGAGTTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAGAGGCAGCCAAATAGGGGAATTGCTACATAG 1458 0.4451 MSLLVDKMQSDNGKLFIGGISWDTNEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTEGDFKQYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLHRTFHELNGKMVEVKRAVPKELSPGPSRTALGGYNYGLSRVNSFLNGFTQGYTPSTVGGYGLRVDGRFSPVAGGRNGFAPFGSGYGMSMNFEPGLSAGFGGNANFSSNLNYGRGLNPYFIGNSNRFGSPVGYDSGNGGNNSFFSSVTRNLWGNGGLSYGTSSANSSAYIGSGSGSVGGNTFGNTGVNWGSSAISGHGGGNNVSQSGGNLGYGGRDNSFGLGTGGYGRSSGTTFAPTSSYSATNGGVDGDLADFYNNSSVYGDPTWRSSNSEQDGSGPFGYGLGGAASDVSAKSSPGYVGGYTVNKRQPNRGIAT 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2155g00008 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 89 IPR000504 GO:0003723
Gabi2155g00008 485 Gene3D - 110 196 IPR012677 -
Gabi2155g00008 485 FunFam Heterogeneous nuclear ribonucleoprotein 1 12 94 - -
Gabi2155g00008 485 MobiDBLite consensus disorder prediction 435 485 - -
Gabi2155g00008 485 SUPERFAMILY RNA-binding domain, RBD 111 209 IPR035979 GO:0003676
Gabi2155g00008 485 SUPERFAMILY RNA-binding domain, RBD 6 111 IPR035979 GO:0003676
Gabi2155g00008 485 SMART rrm1_1 114 186 IPR000504 GO:0003723
Gabi2155g00008 485 SMART rrm1_1 14 85 IPR000504 GO:0003723
Gabi2155g00008 485 Gene3D - 11 95 IPR012677 -
Gabi2155g00008 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 76 IPR000504 GO:0003723
Gabi2155g00008 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 172 IPR000504 GO:0003723
Gabi2155g00008 485 CDD RRM2_Hrp1p 114 191 - -
Gabi2155g00008 485 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 8 481 - -
Gabi2155g00008 485 CDD RRM1_hnRNPA_hnRNPD_like 15 85 - -
Gabi2155g00008 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Gabi2155g00008 485 FunFam Heterogeneous nuclear ribonucleoprotein 1 110 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2155g00008 Gabi-Chr2155 61098 66364 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2155g00008 6 82 Eukaryotic Initiation Factors Gene Family AT1G71770 36.364 2.52e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2155g00008 K14411 - gmx:100795907 855.899