Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2153g00012 ATGGCTCCACCGCCGCCGGTGGAACACAACGCAGACTCCGCCACCGTCGCAGAGTCTCAGAGATCTATTCCGACGCCGTTTCTCACCAAAACCTATCAGCTCGTCGAGGACCAATCCATAGACGACGTGATTTCTTGGAACGAAGACGGATCCACCTTCATCGTTTGGAACCCTACCGTCTTCGCCAGAGACTTGCTCCCTAAATATTTCAAGCACAACAATTTCTCCAGCTTCGTTCGCCAACTCAACACTTACGGATTCAGAAAAGTTGTACCTGATCGGTGGGAATTCTCCAACGAGTATTTCCGCAGAGGAGAGAAACGGCTTCTATGTGAAATCCAACGGCGGAAGATCTCGTCTCCGTCGCCCTCGCCGACGGTGACGGCCATGGCGACAACCACGTCAGCTGCGGTTCCTACGCCGCTTCCGTTGACTGCGATTCCGACAGCGATGCCGATCATATCGCCGTCGAACTCAGGCGAGGAGCAGGTGATATCGTCGAACTCGTCACCGTCGCTAGCGCCGGCGGAGCTTCTAGACGAGAACGAGAGGCTAAGGAAAGAGAACGTTCAGCTCACGAAGGAGCTCGCAGACATGAGATCGCTCTGCCACAATATATATAGTCTCATGTCGAATTACGCGAACGCTAACAACAACGGCAGCTGCCAACACAACCAAACAGACGGCGGCGGAGGCGGCGTCTGCCGGCAAGGAAGCAGAGAGTCCGGCATGACGGCGGTGAGGCCGCTTGATTTGATGCCGGCGAAGCGAAGCTCCGACGAGGAGATGGTGGCGGAGACGGCGGTGGAGGATTTGAATCCGAAGCTGTTTGGAGTGGCGATTGGAGCGAAGCGAGCGAGAGAGGGTGGCGGTATCGGAGGAAGAGGTGGGGAGGAGGAAGATACGCTACTGCGCCTGCATCAACCGGGTGATGCGGACGTGAAATCAGAGCCGTTGGATTTTCATAACCATAGCGGTAATCAGGAATCGCCGTGGCTTAACCAATGCCACAGAGCGAATCAGAGGGTGTGTAATTGA 1038 0.5559 MAPPPPVEHNADSATVAESQRSIPTPFLTKTYQLVEDQSIDDVISWNEDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNEYFRRGEKRLLCEIQRRKISSPSPSPTVTAMATTTSAAVPTPLPLTAIPTAMPIISPSNSGEEQVISSNSSPSLAPAELLDENERLRKENVQLTKELADMRSLCHNIYSLMSNYANANNNGSCQHNQTDGGGGGVCRQGSRESGMTAVRPLDLMPAKRSSDEEMVAETAVEDLNPKLFGVAIGAKRAREGGGIGGRGGEEEDTLLRLHQPGDADVKSEPLDFHNHSGNQESPWLNQCHRANQRVCN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2153g00012 345 Pfam HSF-type DNA-binding 27 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2153g00012 345 ProSitePatterns HSF-type DNA-binding domain signature. 66 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2153g00012 345 FunFam Heat stress transcription factor B-4 19 117 - -
Gabi2153g00012 345 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 19 240 IPR027725 -
Gabi2153g00012 345 Coils Coil 182 202 - -
Gabi2153g00012 345 SMART hsfneu3 23 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2153g00012 345 SUPERFAMILY "Winged helix" DNA-binding domain 24 116 IPR036390 -
Gabi2153g00012 345 Gene3D - 19 117 IPR036388 -
Gabi2153g00012 345 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2153g00012 345 PRINTS Heat shock factor (HSF) domain signature 27 50 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2153g00012 345 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2153g00012 Gabi-Chr2153 220321 222120 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2153g00012 5 345 HSF AT5G62020 48.315 3.97e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi2153g00012 HSF_DNA-bind 4.5e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2153g00012 K09419 - gmx:100812267 469.159