Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2151g00012 ATGGGAAGAGGGAGGGTGGTTCTAGAGAGAATAGAGAACAAGATCAACCGCCAAGTAACCTTCTCAAAGCGCAGGAGTGGATTGCTGAAGAAAGCTTTTGAGCTTTCTGTGTTATGTGATGCTGAAGTTGCCCTTATCATCCTTTCAAGCCGTGGCAAGATTTTTCAGTACAGCAGCACTGACATTAACAAAATCATTGAGAGGTATCGCCGATGTCGTTACAACAATTCACATGATGGCAATTTATTTGAACATGAATCACAGAGCTTATACCAGGAGTTCTTAAACATAAGAGAGGAATATGAATCTCTTGAGCGCACACAAAGGCATTGTCAAGGAGAAGAACTTGAGCCTCTTAGCTTGAAAGAATTGCAGAAACTTGAGAAACAACTAGACGGAACGCTCACACTAGCTCGACAGCAGCAAACGAAGAAGCTCATGGCACGAGCGGAAGAATTACGCGAAAAGGTGCACAACTTGGAGGAGCTTAACAAACAACTGGAATACAAGGAAAGAGACATATTATCAAGCCTCGTCGCTGATAATAACAGCCATGTTCAGTTGCATGCTACACAATCCAATCAAGTTGAATCAGGAACAACCTTAAGCACACGGTTTCGGCACCAGGAAGCTGCTTCAAAGGGAAAAGCAATTGGCACAAGGACAGAGCGTAGTCAGAGCAGCGAAAACATAAACAATGGATGGCTGGTGTGA 714 0.437 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIILSSRGKIFQYSSTDINKIIERYRRCRYNNSHDGNLFEHESQSLYQEFLNIREEYESLERTQRHCQGEELEPLSLKELQKLEKQLDGTLTLARQQQTKKLMARAEELREKVHNLEELNKQLEYKERDILSSLVADNNSHVQLHATQSNQVESGTTLSTRFRHQEAASKGKAIGTRTERSQSSENINNGWLV 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2151g00012 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi2151g00012 237 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2151g00012 237 Coils Coil 124 173 - -
Gabi2151g00012 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi2151g00012 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 189 - -
Gabi2151g00012 237 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Gabi2151g00012 237 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2151g00012 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi2151g00012 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi2151g00012 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi2151g00012 237 MobiDBLite consensus disorder prediction 219 237 - -
Gabi2151g00012 237 FunFam MADS-box transcription factor MADS-MC 13 79 - -
Gabi2151g00012 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi2151g00012 237 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Gabi2151g00012 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi2151g00012 237 MobiDBLite consensus disorder prediction 208 237 - -
Gabi2151g00012 237 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2151g00012 Gabi-Chr2151 218138 270275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2151g00012 1 170 MADS-box Gene Family AT2G45650 57.647 2.06e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi2151g00012 K-box 6.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2151g00012 K09264 - gmx:100793681 340.502