Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2151g00009 ATGGTGAGGGGAAAGATTCAGATGAAAAGAATTGAGAAAGAAGGAAGCCGTCAAGTGACCTTTTCAAAGCGTAAAAATGGGCTTCTAAAGAAAGCTCACGAGTTATCTGTTCTTTGTGAAGCACAAGTTGCTGTAATAATCTTCTCTCAGAAAGGCAGACTCTATGAATTCTCAAGTTCAGACATGAAAAAGATTTTGGAACGATACCGTGAATATGTCAAAGATGTTCCCGCTAATAAGTTCGAAGAGGACTTTATCCAGAAACTCGTGTTTGAGTCATCAAGCATGGCAAAGGAGATAGAGCTTCTTGAACATTCTCAAAGGATGCTACTGGGACATGGCTTGAATTCTTGTTCTCTTGATGAACTCCAAGGAATTGAGGACCAGCTGGAGAGAAGTTTGCAAAAGATCAGGCAGAGAAAGGGTCAGCTTTTTAGGGAGCACATTGAACAACTAAAAAACAAGGAGCGAGACATACTCAGAGAGAATGCTAAATTAAGTGAAATGTGTGGTGAAAAATCATGGCCGCAGCAATGGGTTAAACCCACAGAAGCAGCACCCCACAGTCCAAGTAGCCACAGTTTACATGTAGTGGATACTGAATTGTTTATTGGCTTGCCAGAACAGCGATGCTGA 636 0.4151 MVRGKIQMKRIEKEGSRQVTFSKRKNGLLKKAHELSVLCEAQVAVIIFSQKGRLYEFSSSDMKKILERYREYVKDVPANKFEEDFIQKLVFESSSMAKEIELLEHSQRMLLGHGLNSCSLDELQGIEDQLERSLQKIRQRKGQLFREHIEQLKNKERDILRENAKLSEMCGEKSWPQQWVKPTEAAPHSPSSHSLHVVDTELFIGLPEQRC 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2151g00009 211 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2151g00009 211 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Gabi2151g00009 211 Coils Coil 149 169 - -
Gabi2151g00009 211 Coils Coil 120 147 - -
Gabi2151g00009 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi2151g00009 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi2151g00009 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi2151g00009 211 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Gabi2151g00009 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi2151g00009 211 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977|GO:0045944
Gabi2151g00009 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi2151g00009 211 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Gabi2151g00009 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Gabi2151g00009 211 Pfam K-box region 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2151g00009 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi2151g00009 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2151g00009 Gabi-Chr2151 151492 169651 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2151g00009 1 210 MADS-box Gene Family AT4G22950 48.837 4.49e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi2151g00009 K-box 2.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2151g00009 - - gmx:100800580 265.003