Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2150g00009 ATGGATGAAAGGTATCCAAGGGATGCTGTATACCAGAGAAACACTTTCCCCCGCGACATTTTGGATAGGGAGGCCTATCTGCCACCAGGACCTGCTGTTGGCCATTGGAGTCAATCCAAGCGGAGAGGTTATGATGAAGATTATCCAATTGATCGGGATTCTAGACGTTTTCAGAGGCCATATCACGATTCATATAATCAGATTGATCCTTTTGGGGATCATGAGATTGACACATACCCAGAATATGATAAGTTTCGGGATGGCTATACCAGCATTGAAAATTATGGTGATCGAGGATATGATAAACCTGCAAGGTTTGTAGGACATGACCGTGATGATTATGCATATGATGATTATGTCTACAAGTCCCGTGTTTCTCATCATCGTAGGGAGGATAGCCGTGAGAGAGATTATGATCATGGTCGGCATAGTTATGATTCTGATTATGAAAGAGGTAGTAGAAGAGATAGTAGTAGGAGGCGGCATGAATCACATGATCGGGAACGAGATAAGAGATGTCTTAGTCGGGAAGGAGATCTAAGTCCACATAGGAGGCATGAGCGTTCCCGTTCTCGTTCCCGATCCAGATCCCGGTCCCAATCCCGGTCCCATTCTCGTTCCCGTTCCCAATCTCATGGATATGATGATCATCCAAGGTCTGGGTCCCCTCGAGGTCGCAGTCATGGTCGAAGCTATCGAGAAGACAGCTATCCTGACAGTCGATATGATAGAAGTGAAAGACGCAGGGAACGTGAGGATAAACGTCAGCGTGAGCATTATTCTGTGGCTCCATCTGCTACTGTTGTTGTTAAAGGTCTTTCACAGAAGACAACTGAAGAAGATCTATATCAAATCCTTGCGGAATGGGGGCCTCTTCGTCATGTTCGCGTTATAAAGGAGAGAAATTCTGGCATCTCTCGTGGATTTGCATTTATTGATTTTCCTTCCGTGGGAGCTGCACAAGGAATGATGGACAAGCTAGGAGATGATGGTCTTGTCGTGGATGGCAGAAAGCTATTCTTTGAATATAGTAGTAAGCCAACTGGAGGTCCAGGTCCAGATGGTGCTATGAAATCAGGTCATAATCATAAAAGCATTACAGTACCATCTGATTGGATATGCACTGTATGTGACTACATCAATTTTGCGCGCCGGACTTCCTGCTATCAGTGTAATGAGCCACGGACCGATGATGCTCCTGCGGCAGATATTTCAATGTCAAATTCAGCAGCCTTAGGAAAGAAAGGTTTGGAGGCAGGTCCAACTCATGTTTTGGTTGTTCGTGGATTGGATGAAAATGCTGATGAAGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGACAAGTTCACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAGGATGCTACCAAAGCTCTCGAGGCAACAAATAGAACAACACTTGAGAAGAATGGGCAGATTCTAAGAGTAGCATATGCTAAAAGTATTCTGGGCCCTGGATCAGGAATTTCCCAATCAAGCAGTCTTGCAGCTGCTGCTATTGAGGCTGCAGCTTTTTCTCAACAGTATGATTCTGTGGGATGGACTCCAAAAGAATACAATCCAGATGACAAACAATCTAAAGGTTCAGAGCAAACTGGCACAGAAGCTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCCTCGGGTTATTATTATGATGCTGCTTCTGGGTTTTACTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACTACCAAACTCAGCAATACATTCCTTGCACTGATCAAGATCAGAATAAAACAACTAATAACCAGTCTGAACCATCTAAGGCATCTGAAGGTTCGAGCATTAAAAAGGTGGTGATTTCTGCACCAGCTATTACTGTTGCATCAGTTGAGAAGCCAGCTTCGTTGGCAGATGCTGTCCAGGCTGCTGCAGCAGCTGCTTTGGCTGCAGAAAAGAAAGAAAAAGAAAAATCAAAGGAGATAAAACTTGCCTCTAAAAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTGTTGACAATGTGGAAGCAGAGGAGCCATGAGGGGCAGGCTACTCGAGTGGCTCTTGAGGACAATCAACAATCTGTTTCTGCTGATGATAGGTCATATTCTTCTGGACATTCTGTAAAGAACAAGTTAAAAAATGAGACTACAGTAAGGGAAACTAATGCATCTAATCTGGGAACTCACACAACGCTTGCCCAGTCTACTGCTATTGATTCTCTGTCACAGCCACGTCCTGTTAGTAATAGCCTTGGAGGCACTGTGATGGGGGTTATAAGGGGCTCAGGAAGAGGGATTGTTAAATCCGATACTTCATATTCAGGTTCTACAGCTGCTGCATCATCTTCAGCAAATGTTGATATGCAGATGATTGCTACTCCCTTTAGAACAGATGTCTCTGCCCTGAGTTCATATACACCGTCTGTGGCTGTTGGAAGTGGCAGAAGACGGTTTTCAGAAATGCCTCATTCTGCTTCAACTCACAAGGAACAACCTCAAACAACCTACAGGGATCGTGCGGCTGAGAGGAGAAGTTTGTATGGCTCATCATCTTCAGTTGGGAATGATTTGGCTGACCTTGAAATTGGGGATTCAAATCGAGATTTTGCGTCAAGGAAGGGTGATCCAATGCCTTTTCCTCCTGGGGTTGGTGGAGGACGCATGGTTGGAGATGTCAATCTTGATACTTTTGAGGTGATTGCGGCAGACAAAGCAATTGATGAAAACAATGTTGGTAATCGGATGCTTCGCAACATGGGATGGCAGGAAGGCTTGGGACTAGGAAAGGATGGAAGCGGAATGATAGAGCCTGTCCAGGCGCAAGCCATGGAAAATAGAGCAGGACTTGGGAGTCAGCAGAAGAAGTTGGACCCTAGCCTCGAGGTGCAGGCAGGGGATAGTTACAAAATGCTTATTCATAAAAAAGCACTTGCCAGGTTTCGGGAAATGTCAGAGAGTTAA 3048 0.4455 MDERYPRDAVYQRNTFPRDILDREAYLPPGPAVGHWSQSKRRGYDEDYPIDRDSRRFQRPYHDSYNQIDPFGDHEIDTYPEYDKFRDGYTSIENYGDRGYDKPARFVGHDRDDYAYDDYVYKSRVSHHRREDSRERDYDHGRHSYDSDYERGSRRDSSRRRHESHDRERDKRCLSREGDLSPHRRHERSRSRSRSRSRSQSRSHSRSRSQSHGYDDHPRSGSPRGRSHGRSYREDSYPDSRYDRSERRREREDKRQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGAMKSGHNHKSITVPSDWICTVCDYINFARRTSCYQCNEPRTDDAPAADISMSNSAALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTTLEKNGQILRVAYAKSILGPGSGISQSSSLAAAAIEAAAFSQQYDSVGWTPKEYNPDDKQSKGSEQTGTEAGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDYQTQQYIPCTDQDQNKTTNNQSEPSKASEGSSIKKVVISAPAITVASVEKPASLADAVQAAAAAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQQSVSADDRSYSSGHSVKNKLKNETTVRETNASNLGTHTTLAQSTAIDSLSQPRPVSNSLGGTVMGVIRGSGRGIVKSDTSYSGSTAAASSSANVDMQMIATPFRTDVSALSSYTPSVAVGSGRRRFSEMPHSASTHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLEIGDSNRDFASRKGDPMPFPPGVGGGRMVGDVNLDTFEVIAADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQAQAMENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSES 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2150g00009 1015 MobiDBLite consensus disorder prediction 120 263 - -
Gabi2150g00009 1015 Gene3D - 365 398 - -
Gabi2150g00009 1015 Pfam OCRE domain 562 610 IPR041591 -
Gabi2150g00009 1015 CDD RRM1_RRM2_RBM5_like 421 501 - -
Gabi2150g00009 1015 PANTHER RNA-BINDING PROTEIN 161 1010 - -
Gabi2150g00009 1015 ProSiteProfiles Zinc finger RanBP2 type profile. 368 397 IPR001876 -
Gabi2150g00009 1015 MobiDBLite consensus disorder prediction 613 633 - -
Gabi2150g00009 1015 Gene3D - 404 525 IPR012677 -
Gabi2150g00009 1015 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 423 503 IPR000504 GO:0003723
Gabi2150g00009 1015 MobiDBLite consensus disorder prediction 31 82 - -
Gabi2150g00009 1015 MobiDBLite consensus disorder prediction 187 205 - -
Gabi2150g00009 1015 ProSitePatterns Zinc finger RanBP2-type signature. 372 391 IPR001876 -
Gabi2150g00009 1015 SUPERFAMILY RNA-binding domain, RBD 421 505 IPR035979 GO:0003676
Gabi2150g00009 1015 SMART G-patch_5 935 981 IPR000467 GO:0003676
Gabi2150g00009 1015 MobiDBLite consensus disorder prediction 208 260 - -
Gabi2150g00009 1015 MobiDBLite consensus disorder prediction 536 563 - -
Gabi2150g00009 1015 ProSiteProfiles G-patch domain profile. 937 983 IPR000467 GO:0003676
Gabi2150g00009 1015 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 425 491 IPR000504 GO:0003723
Gabi2150g00009 1015 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 327 IPR000504 GO:0003723
Gabi2150g00009 1015 MobiDBLite consensus disorder prediction 709 749 - -
Gabi2150g00009 1015 SUPERFAMILY RNA-binding domain, RBD 188 344 IPR035979 GO:0003676
Gabi2150g00009 1015 MobiDBLite consensus disorder prediction 613 631 - -
Gabi2150g00009 1015 SUPERFAMILY Ran binding protein zinc finger-like 362 398 IPR036443 -
Gabi2150g00009 1015 Gene3D - 230 364 IPR012677 -
Gabi2150g00009 1015 SMART rrm1_1 267 342 IPR000504 GO:0003723
Gabi2150g00009 1015 SMART rrm1_1 424 499 IPR000504 GO:0003723
Gabi2150g00009 1015 CDD OCRE_SUA_like 558 611 IPR035623 -
Gabi2150g00009 1015 SMART zf_4 370 394 IPR001876 -
Gabi2150g00009 1015 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 346 IPR000504 GO:0003723
Gabi2150g00009 1015 MobiDBLite consensus disorder prediction 39 82 - -
Gabi2150g00009 1015 Pfam G-patch domain 938 979 IPR000467 GO:0003676
Gabi2150g00009 1015 MobiDBLite consensus disorder prediction 120 186 - -
Gabi2150g00009 1015 MobiDBLite consensus disorder prediction 842 867 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2150g00009 Gabi-Chr2150 108887 118468 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2150g00009 265 487 Eukaryotic Initiation Factors Gene Family AT2G36660 24.800 4.23e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2150g00009 K13094 - gmx:100777686 1572.76