Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2150g00008 ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTGGAGGGTTATGGTGCGGTCCATGAGCCAAATTTTCGGGTTGGTGGTTCTTATGATGAAAGACGGTTTATGGATGAAAGGTATCCAAGGGATGCTGTATACCAGAGAAACACTTTCCCCCGCGACATTTTGGATAGGGAGGCCTATCTGCCACCAGGACCTGCTGTTGGCCATTGGAGTCAATCCAAGCGGAGAGGTTATGATGAAGATTATCCAATTGATCGGGATTCTAGACGTTTTCAGAGGCCATATCACGATTCATATAATCAGATTGATCCTTTTGGGGATCATGAGATTGACACATACCCAGAATATGATAAGTTTCGGGATGGCTATACCAGCATTGAAAATTATGGTGATCGAGGATATGATAAACCTGCAAGGTTTGTAGGACATGACCGTGATGATTATGCATATGATGATTATGTCTACAAGTCCCGTGTTTCTCATCATCGTAGGGAGGATAGCCGTGAGAGAGATTATGATCATGGTCGGCATAGTTATGATTCTGATTATGAAAGAGGTAGTAGAAGAGATAGTAGTAGGAGGCGGCATGAATCACATGATCGGGAACGAGATAAGAGATGTCTTAGTCGGGAAGGAGATCTAAGTCCACATAGGAGGCATGAGCGTTCCCGTTCTCGTTCCCGATCCAGATCCCGGTCCCAATCCCGGTCCCATTCTCGTTCCCGTTCCCAATCTCATGGATATGATGATCATCCAAGGTCTGGGTCCCCTCGAGGTCGCAGTCATGGTCGAAGCTATCGAGAAGACAGCTATCCTGACAGTCGATATGATAGAAGTGAAAGACGCAGGGAACGTGAGGATAAACGTCAGCGTGAGCATTATTCTGTGGCTCCATCTGCTACTGTTGTTGTTAAAGGTCTTTCACAGAAGACAACTGAAGAAGATCTATATCAAATCCTTGCGGAATGGGGGCCTCTTCGTCATGTTCGCGTTATAAAGGAGAGAAATTCTGGCATCTCTCGTGGATTTGCATTTATTGATTTTCCTTCCGTGGGAGCTGCACAAGGAATGATGGACAAGCTAGGAGATGATGGTCTTGTCGTGGATGGCAGAAAGCTATTCTTTGAATATAGTAGTAAGCCAACTGGAGGTCCAGGTCCAGATGGTGCTATGAAATCAGGTCATAATCATAAAAGCATTACAGTACCATCTGATTGGATATGCACTGTATGTGACTACATCAATTTTGCGCGCCGGACTTCCTGCTATCAGTGTAATGAGCCACGGACCGATGATGCTCCTGCGGCAGATATTTCAATGTCAAATTCAGCAGCCTTAGGAAAGAAAGGTTTGGAGGCAGGTCCAACTCATGTTTTGGTTGTTCGTGGATTGGATGAAAATGCTGATGAAGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGACAAGTTCACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAGGATGCTACCAAAGCTCTCGAGGCAACAAATAGAACAACACTTGAGAAGAATGGGCAGATTCTAAGAGTAGCATATGCTAAAAGTATTCTGGGCCCTGGATCAGGAATTTCCCAATCAAGCAGTCTTGCAGCTGCTGCTATTGAGGCTGCAGCTTTTTCTCAACAGTATGATTCTGTGGGATGGACTCCAAAAGAATACAATCCAGATGACAAACAATCTAAAGGTTCAGAGCAAACTGGCACAGAAGCTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCCTCGGGTTATTATTATGATGCTGCTTCTGGGTTTTACTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACTACCAAACTCAGCAATACATTCCTTGCACTGATCAAGATCAGAATAAAACAACTAATAACCAGTCTGAACCATCTAAGGCATCTGAAGGTTCGAGCATTAAAAAGGTGGTGATTTCTGCACCAGCTATTACTGTTGCATCAGTTGAGAAGCCAGCTTCGTTGGCAGATGCTGTCCAGGCTGCTGCAGCAGCTGCTTTGGCTGCAGAAAAGAAAGAAAAAGAAAAATCAAAGGAGATAAAACTTGCCTCTAAAAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTGTTGACAATGTGGAAGCAGAGGAGCCATGAGGGGCAGGCTACTCGAGTGGCTCTTGAGGACAATCAACAATCTGTTTCTGCTGATGATAGGTCATATTCTTCTGGACATTCTGTAAAGAACAAGTTAAAAAATGAGACTACAGTAAGGGAAACTAATGCATCTAATCTGGGAACTCACACAACGCTTGCCCAGTCTACTGCTATTGATTCTCTGTCACAGCCACGTCCTGTTAGTAATAGCCTTGGAGGCACTGTGATGGGGGTTATAAGGGGCTCAGGAAGAGGGATTGTTAAATCCGATACTTCATATTCAGGTTCTACAGCTGCTGCATCATCTTCAGCAAATGTTGATATGCAGATGATTGCTACTCCCTTTAGAACAGATGTCTCTGCCCTGAGTTCATATACACCGTCTGTGGCTGTTGGAAGTGGCAGAAGACGGTTTTCAGAAATGCCTCATTCTGCTTCAACTCACAAGGAACAACCTCAAACAACCTACAGGGATCGTGCGGCTGAGAGGAGAAGTTTGTATGGCTCATCATCTTCAGTTGGGAATGATTTGGCTGACCTTGAAATTGGGGATTCAAATCGAGATTTTGCGTCAAGGAAGGGTGATCCAATGCCTTTTCCTCCTGGGGTTGGTGGAGGACGCATGGTTGGAGATGTCAATCTTGATACTTTTGAGGTGATTGCGGCAGACAAAGCAATTGATGAAAACAATGTTGGTAATCGGATGCTTCGCAACATGGGATGGCAGGAAGGCTTGGGACTAGGAAAGGATGGAAGCGGAATGATAGAGCCTGTCCAGGCGCAAGCCATGGAAAATAGAGCAGGACTTGGGAGTCAGCAGAAGAAGTTGGACCCTAGCCTCGAGGTGCAGGCAGGGGATAGTTACAAAATGCTTATTCATAAAAAAGCACTTGCCAGGTTTCGGGAAATGTCAGAGAGTTAA 3168 0.4473 MDPGRYALHQGWDNNSALEGYGAVHEPNFRVGGSYDERRFMDERYPRDAVYQRNTFPRDILDREAYLPPGPAVGHWSQSKRRGYDEDYPIDRDSRRFQRPYHDSYNQIDPFGDHEIDTYPEYDKFRDGYTSIENYGDRGYDKPARFVGHDRDDYAYDDYVYKSRVSHHRREDSRERDYDHGRHSYDSDYERGSRRDSSRRRHESHDRERDKRCLSREGDLSPHRRHERSRSRSRSRSRSQSRSHSRSRSQSHGYDDHPRSGSPRGRSHGRSYREDSYPDSRYDRSERRREREDKRQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGAMKSGHNHKSITVPSDWICTVCDYINFARRTSCYQCNEPRTDDAPAADISMSNSAALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTTLEKNGQILRVAYAKSILGPGSGISQSSSLAAAAIEAAAFSQQYDSVGWTPKEYNPDDKQSKGSEQTGTEAGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDYQTQQYIPCTDQDQNKTTNNQSEPSKASEGSSIKKVVISAPAITVASVEKPASLADAVQAAAAAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQQSVSADDRSYSSGHSVKNKLKNETTVRETNASNLGTHTTLAQSTAIDSLSQPRPVSNSLGGTVMGVIRGSGRGIVKSDTSYSGSTAAASSSANVDMQMIATPFRTDVSALSSYTPSVAVGSGRRRFSEMPHSASTHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLEIGDSNRDFASRKGDPMPFPPGVGGGRMVGDVNLDTFEVIAADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQAQAMENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSES 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2150g00008 1055 Gene3D - 405 438 - -
Gabi2150g00008 1055 ProSitePatterns Zinc finger RanBP2-type signature. 412 431 IPR001876 -
Gabi2150g00008 1055 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 463 543 IPR000504 GO:0003723
Gabi2150g00008 1055 CDD RRM1_RRM2_RBM5_like 461 541 - -
Gabi2150g00008 1055 MobiDBLite consensus disorder prediction 653 673 - -
Gabi2150g00008 1055 Pfam OCRE domain 602 650 IPR041591 -
Gabi2150g00008 1055 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 386 IPR000504 GO:0003723
Gabi2150g00008 1055 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 367 IPR000504 GO:0003723
Gabi2150g00008 1055 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 465 531 IPR000504 GO:0003723
Gabi2150g00008 1055 MobiDBLite consensus disorder prediction 227 245 - -
Gabi2150g00008 1055 SUPERFAMILY RNA-binding domain, RBD 461 545 IPR035979 GO:0003676
Gabi2150g00008 1055 PANTHER RNA-BINDING PROTEIN 191 1050 - -
Gabi2150g00008 1055 MobiDBLite consensus disorder prediction 165 303 - -
Gabi2150g00008 1055 SMART zf_4 410 434 IPR001876 -
Gabi2150g00008 1055 SMART G-patch_5 975 1021 IPR000467 GO:0003676
Gabi2150g00008 1055 SMART rrm1_1 307 382 IPR000504 GO:0003723
Gabi2150g00008 1055 SMART rrm1_1 464 539 IPR000504 GO:0003723
Gabi2150g00008 1055 MobiDBLite consensus disorder prediction 248 300 - -
Gabi2150g00008 1055 SUPERFAMILY RNA-binding domain, RBD 295 390 IPR035979 GO:0003676
Gabi2150g00008 1055 CDD OCRE_SUA_like 598 651 IPR035623 -
Gabi2150g00008 1055 Pfam G-patch domain 978 1019 IPR000467 GO:0003676
Gabi2150g00008 1055 MobiDBLite consensus disorder prediction 576 603 - -
Gabi2150g00008 1055 MobiDBLite consensus disorder prediction 749 789 - -
Gabi2150g00008 1055 Gene3D - 444 565 IPR012677 -
Gabi2150g00008 1055 SUPERFAMILY Ran binding protein zinc finger-like 402 438 IPR036443 -
Gabi2150g00008 1055 MobiDBLite consensus disorder prediction 653 671 - -
Gabi2150g00008 1055 MobiDBLite consensus disorder prediction 882 907 - -
Gabi2150g00008 1055 MobiDBLite consensus disorder prediction 165 226 - -
Gabi2150g00008 1055 ProSiteProfiles G-patch domain profile. 977 1023 IPR000467 GO:0003676
Gabi2150g00008 1055 Gene3D - 270 404 IPR012677 -
Gabi2150g00008 1055 ProSiteProfiles Zinc finger RanBP2 type profile. 408 437 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2150g00008 Gabi-Chr2150 108887 118468 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2150g00008 305 527 Eukaryotic Initiation Factors Gene Family AT2G36660 24.800 5.32e-09 58.2