Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2150g00007 ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTGGAGGGTTATGGTGCGGTCCATGAGCCAAATTTTCGGGTTGGTGGTTCTTATGATGAAAGACGGTTTATGGATGAAAGGTATCCAAGGGATGCTGTATACCAGAGAAACACTTTCCCCCGCGACATTTTGGATAGGGAGGCCTATCTGCCACCAGGACCTGCTGTTGGCCATTGGAGTCAATCCAAGCGGAGAGGTTATGATGAAGATTATCCAATTGATCGGGATTCTAGACGTTTTCAGAGGCCATATCACGATTCATATAATCAGATTGATCCTTTTGGGGATCATGAGATTGACACATACCCAGAATATGATAAGTTTCGGGATGGCTATACCAGCATTGAAAATTATGGTGATCGAGGATATGATAAACCTGCAAGGTTTGTAGGACATGACCGTGATGATTATGCATATGATGATTATGTCTACAAGTCCCGTGTTTCTCATCATCGTAGGGAGGATAGCCGTGAGAGAGATTATGATCATGGTCGGCATAGTTATGATTCTGATTATGAAAGAGGTAGTAGAAGAGATAGTAGTAGGAGGCGGCATGAATCACATGATCGGGAACGAGATAAGAGATGTCTTAGTCGGGAAGGAGATCTAAGTCCACATAGGAGGCATGAGCGTTCCCGTTCTCGTTCCCGATCCAGATCCCGGTCCCAATCCCGGTCCCATTCTCGTTCCCGTTCCCAATCTCATGGATATGATGATCATCCAAGGTCTGGGTCCCCTCGAGGTCGCAGTCATGGTCGAAGCTATCGAGAAGACAGCTATCCTGACAGTCGATATGATAGAAGTGAAAGACGCAGGGAACGTGAGGATAAACGTCAGCGTGAGCATTATTCTGTGGCTCCATCTGCTACTGTTGTTGTTAAAGGTCTTTCACAGAAGACAACTGAAGAAGATCTATATCAAATCCTTGCGGAATGGGGGCCTCTTCGTCATGTTCGCGTTATAAAGGAGAGAAATTCTGGCATCTCTCGTGGATTTGCATTTATTGATTTTCCTTCCGTGGGAGCTGCACAAGGAATGATGGACAAGCTAGGAGATGATGGTCTTGTCGTGGATGGCAGAAAGCTATTCTTTGAATATAGTAAGCCAACTGGAGGTCCAGGTCCAGATGGTGCTATGAAATCAGGTCATAATCATAAAAGCATTACAGTACCATCTGATTGGATATGCACTGTATGTGACTACATCAATTTTGCGCGCCGGACTTCCTGCTATCAGTGTAATGAGCCACGGACCGATGATGCTCCTGCGGCAGATATTTCAATGTCAAATTCAGCAGCCTTAGGAAAGAAAGGTTTGGAGGCAGGTCCAACTCATGTTTTGGTTGTTCGTGGATTGGATGAAAATGCTGATGAAGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGACAAGTTCACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAGGATGCTACCAAAGCTCTCGAGGCAACAAATAGAACAACACTTGAGAAGAATGGGCAGATTCTAAGAGTAGCATATGCTAAAAGTATTCTGGGCCCTGGATCAGGAATTTCCCAATCAAGCAGTCTTGCAGCTGCTGCTATTGAGGCTGCAGCTTTTTCTCAACAGTATGATTCTGTGGGATGGACTCCAAAAGAATACAATCCAGATGACAAACAATCTAAAGGTTCAGAGCAAACTGGCACAGAAGCTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCCTCGGGTTATTATTATGATGCTGCTTCTGGGTTTTACTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACTACCAAACTCAGCAATACATTCCTTGCACTGATCAAGATCAGAATAAAACAACTAATAACCAGTCTGAACCATCTAAGGCATCTGAAGGTTCGAGCATTAAAAAGGTGGTGATTTCTGCACCAGCTATTACTGTTGCATCAGTTGAGAAGCCAGCTTCGTTGGCAGATGCTGTCCAGGCTGCTGCAGCAGCTGCTTTGGCTGCAGAAAAGAAAGAAAAAGAAAAATCAAAGGAGATAAAACTTGCCTCTAAAAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTGTTGACAATGTGGAAGCAGAGGAGCCATGAGGGGCAGGCTACTCGAGTGGCTCTTGAGGACAATCAACAATCTGTTTCTGCTGATGATAGGTCATATTCTTCTGGACATTCTGTAAAGAACAAGTTAAAAAATGAGACTACAGTAAGGGAAACTAATGCATCTAATCTGGGAACTCACACAACGCTTGCCCAGTCTACTGCTATTGATTCTCTGTCACAGCCACGTCCTGTTAGTAATAGCCTTGGAGGCACTGTGATGGGGGTTATAAGGGGCTCAGGAAGAGGGATTGTTAAATCCGATACTTCATATTCAGGTTCTACAGCTGCTGCATCATCTTCAGCAAATGTTGATATGCAGATGATTGCTACTCCCTTTAGAACAGATGTCTCTGCCCTGAGTTCATATACACCGTCTGTGGCTGTTGGAAGTGGCAGAAGACGGTTTTCAGAAATGCCTCATTCTGCTTCAACTCACAAGGAACAACCTCAAACAACCTACAGGGATCGTGCGGCTGAGAGGAGAAGTTTGTATGGCTCATCATCTTCAGTTGGGAATGATTTGGCTGACCTTGAAATTGGGGATTCAAATCGAGATTTTGCGTCAAGGAAGGGTGATCCAATGCCTTTTCCTCCTGGGGTTGGTGGAGGACGCATGGTTGGAGATGTCAATCTTGATACTTTTGAGGTGATTGCGGCAGACAAAGCAATTGATGAAAACAATGTTGGTAATCGGATGCTTCGCAACATGGGATGGCAGGAAGGCTTGGGACTAGGAAAGGATGGAAGCGGAATGATAGAGCCTGTCCAGGCGCAAGCCATGGAAAATAGAGCAGGACTTGGGAGTCAGCAGAAGAAGTTGGACCCTAGCCTCGAGGTGCAGGCAGGGGATAGTTACAAAATGCTTATTCATAAAAAAGCACTTGCCAGGTTTCGGGAAATGTCAGAGAGTTAA 3165 0.4474 MDPGRYALHQGWDNNSALEGYGAVHEPNFRVGGSYDERRFMDERYPRDAVYQRNTFPRDILDREAYLPPGPAVGHWSQSKRRGYDEDYPIDRDSRRFQRPYHDSYNQIDPFGDHEIDTYPEYDKFRDGYTSIENYGDRGYDKPARFVGHDRDDYAYDDYVYKSRVSHHRREDSRERDYDHGRHSYDSDYERGSRRDSSRRRHESHDRERDKRCLSREGDLSPHRRHERSRSRSRSRSRSQSRSHSRSRSQSHGYDDHPRSGSPRGRSHGRSYREDSYPDSRYDRSERRREREDKRQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSKPTGGPGPDGAMKSGHNHKSITVPSDWICTVCDYINFARRTSCYQCNEPRTDDAPAADISMSNSAALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTTLEKNGQILRVAYAKSILGPGSGISQSSSLAAAAIEAAAFSQQYDSVGWTPKEYNPDDKQSKGSEQTGTEAGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDYQTQQYIPCTDQDQNKTTNNQSEPSKASEGSSIKKVVISAPAITVASVEKPASLADAVQAAAAAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQQSVSADDRSYSSGHSVKNKLKNETTVRETNASNLGTHTTLAQSTAIDSLSQPRPVSNSLGGTVMGVIRGSGRGIVKSDTSYSGSTAAASSSANVDMQMIATPFRTDVSALSSYTPSVAVGSGRRRFSEMPHSASTHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLEIGDSNRDFASRKGDPMPFPPGVGGGRMVGDVNLDTFEVIAADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQAQAMENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSES 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2150g00007 1054 CDD OCRE_SUA_like 597 650 IPR035623 -
Gabi2150g00007 1054 SMART rrm1_1 463 538 IPR000504 GO:0003723
Gabi2150g00007 1054 SMART rrm1_1 307 382 IPR000504 GO:0003723
Gabi2150g00007 1054 MobiDBLite consensus disorder prediction 748 788 - -
Gabi2150g00007 1054 SMART G-patch_5 974 1020 IPR000467 GO:0003676
Gabi2150g00007 1054 Pfam OCRE domain 601 649 IPR041591 -
Gabi2150g00007 1054 SMART zf_4 409 433 IPR001876 -
Gabi2150g00007 1054 MobiDBLite consensus disorder prediction 227 245 - -
Gabi2150g00007 1054 Pfam G-patch domain 977 1018 IPR000467 GO:0003676
Gabi2150g00007 1054 MobiDBLite consensus disorder prediction 575 602 - -
Gabi2150g00007 1054 ProSitePatterns Zinc finger RanBP2-type signature. 411 430 IPR001876 -
Gabi2150g00007 1054 MobiDBLite consensus disorder prediction 652 670 - -
Gabi2150g00007 1054 MobiDBLite consensus disorder prediction 881 906 - -
Gabi2150g00007 1054 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 464 530 IPR000504 GO:0003723
Gabi2150g00007 1054 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 367 IPR000504 GO:0003723
Gabi2150g00007 1054 SUPERFAMILY RNA-binding domain, RBD 295 393 IPR035979 GO:0003676
Gabi2150g00007 1054 MobiDBLite consensus disorder prediction 165 303 - -
Gabi2150g00007 1054 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 386 IPR000504 GO:0003723
Gabi2150g00007 1054 SUPERFAMILY RNA-binding domain, RBD 460 544 IPR035979 GO:0003676
Gabi2150g00007 1054 SUPERFAMILY Ran binding protein zinc finger-like 401 437 IPR036443 -
Gabi2150g00007 1054 CDD RRM1_RRM2_RBM5_like 460 540 - -
Gabi2150g00007 1054 PANTHER RNA-BINDING PROTEIN 200 1049 - -
Gabi2150g00007 1054 MobiDBLite consensus disorder prediction 248 300 - -
Gabi2150g00007 1054 Gene3D - 404 437 - -
Gabi2150g00007 1054 Gene3D - 270 403 IPR012677 -
Gabi2150g00007 1054 ProSiteProfiles Zinc finger RanBP2 type profile. 407 436 IPR001876 -
Gabi2150g00007 1054 MobiDBLite consensus disorder prediction 652 672 - -
Gabi2150g00007 1054 MobiDBLite consensus disorder prediction 165 226 - -
Gabi2150g00007 1054 ProSiteProfiles G-patch domain profile. 976 1022 IPR000467 GO:0003676
Gabi2150g00007 1054 Gene3D - 443 564 IPR012677 -
Gabi2150g00007 1054 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 462 542 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2150g00007 Gabi-Chr2150 108887 118468 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2150g00007 955 1021 C2H2 Transcription Factor Family AT5G26610 40.299 7.77e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2150g00007 K13094 - gmx:100777686 1649.03