Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2148g00019 ATGGCTGATTTTAGCTCATTTATCCTTCCTCAAGATATTTCTCGGCTCATGATCACTGGTTCCACTGCTATTGTTGTGCATACAGGAAGTTTGGATATTTGGAGTCTGATGTCTCCACCACTGCTGGTTACCGAAGAGGAAGGGCAGAGCAACACCTCAACAGTAGCATCTGCATCTTCACAGTCCTTGGACTGTTTCTCCCAAAATGAGGCTGGATTGAAAGAACGCAATTACCTTGCATTGTCAGATTGCTCGTCAGTGGACAGTTCTACTGTTCCGAGCTTGTCTGATGAGAAAAAGGAGAACCTGAATTTGAAGGCTACTGAGTTGAGGCTGGGCCTTCCTGGATCCCAGTCACCTGAAAGGGATACAGATCTTTTCTTGTTGAGCTTAGCAAAAATGGATGAGAAACCACTGTTCCCTTTGCTTCCTACAAAAGATGGAATCTGCTCATTGTCCCAGAAAACTGTGGTTTCAGGCAACAAAAGAGGTTTTGCCGACACAATGGATGGGTTACATGAGGGGAAGTTTCCTGGTAATTCAGGGATAAACATAATGCTATCTCCTAGACCTGGAGCTCAGCCAACTACAATGAATGAAATACCTAGCAAGGTGTTAGAAGAACGGTCTTGTGCAGCAAATGGAACTGGCCATAACTATACAGGAGCTTCTATCAGTGGTAGTGCACCAGCTTCTAAGGCACAAGTTGTTGGTTGGCCTCCGATAAGGTCATTTAGGAAAAACTCATTGGTCACCACTTCAAAGAATAATGATGAAGTAGATGGAAAACCAGGTCCAGGTGCGCTCTTTGTCAAGGTCAGCATGGATGGTGCTCCCTATCTTAGGAAGGTAGACCTACGAAATTACACAACCTACCAGGACCTGTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTCAATGTGGTTCCCATGGACCGGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAAAGACCTGCTGCATGGTTCAGAATATGTACTCACTTATGAAGATAAAGATGGTGATTGGATGCTTGTAGGAGATGTACCATGGAATATGTTCATTGACACATGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCGCCCAGGGCCATGGAAAAATCCAAGAGCAGGAGCTAG 1164 0.4502 MADFSSFILPQDISRLMITGSTAIVVHTGSLDIWSLMSPPLLVTEEEGQSNTSTVASASSQSLDCFSQNEAGLKERNYLALSDCSSVDSSTVPSLSDEKKENLNLKATELRLGLPGSQSPERDTDLFLLSLAKMDEKPLFPLLPTKDGICSLSQKTVVSGNKRGFADTMDGLHEGKFPGNSGINIMLSPRPGAQPTTMNEIPSKVLEERSCAANGTGHNYTGASISGSAPASKAQVVGWPPIRSFRKNSLVTTSKNNDEVDGKPGPGALFVKVSMDGAPYLRKVDLRNYTTYQDLSSALEKMFSCFTLGQCGSHGPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWNMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2148g00019 387 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 103 374 IPR003311 GO:0005634|GO:0006355
Gabi2148g00019 387 FunFam Auxin-responsive protein 263 379 - -
Gabi2148g00019 387 Gene3D - 265 380 - -
Gabi2148g00019 387 SUPERFAMILY CAD & PB1 domains 266 368 - -
Gabi2148g00019 387 ProSiteProfiles PB1 domain profile. 268 371 IPR000270 GO:0005515
Gabi2148g00019 387 Pfam AUX/IAA family 108 378 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2148g00019 Gabi-Chr2148 179693 187406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2148g00019 271 366 B3 DNA Binding Superfamily AT2G46530 35.417 9.71e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi2148g00019 AUX_IAA 6.2e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2148g00019 K14484 - gmx:100500373 590.497