Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2147g00029 ATGGAGAGGCAAGAGTCGATGAAAGCACTGGTTGTTAAGGGTGATTGTAGAATGACAAAATTCCAGAGAAAAAAGACAGAGAAGAAAGGAGAGAGAGAGAGAGAGAGAGAGAATGATTGGAAGAAGGTTTATCATCCTCATGGAAATATGACAACTGGTCCTTCTGATTCTTATGCTGAAGTCAAATGTAGTATCTGCCATGTTGGGACAGATGAAAATCTTCTTCTACTTTGTGATCTTTGTGATACTGCTTCACATACATATTGCGCTGGTTTGGGCTTTACTATTCCTGAAGGTGATTGGTTTTGTCATGATTGTGCTATTTCCCGGGAGACATATGCTAATCAAGAATCAGACAAACAAAACGTTGTGCCAACAGCTGAGCCAAGTGCGACCATCTCTGATATTGTGAGAGTACCAAGCAGCCAGGTGGTTAGAAGACAAAGTGCATCTCCTTTACAACAAAACCAGTCATCTCCTGTTATTCCTTTACCTGATAGGGTGAGTAGATTCAAAGGTAAAAAACCTGTGTCAGATTTCCAACGTGTGCAGCGTAACGTACAAGCATTTCGTGAAAATTGGAATTCTTTGAGAAGTGGTTCATTACGGTTCCATAGCAATTCAGTTCAATCTGGTGGCACAAATAGTCAAAAACAAGATTCTAGTTCCTCATCACTTGGCAAATTAGATGATTCACATTCTATGGCTTCAACAGGCCTTCAACAATCCACTGTCCAAGGGGGTCCTTCTAGCAATATGTTGAATGAGAGAGGCTTGAAAGATATTGACAAGGCTTGGAAAATGATGGACCGGGCAAAGACAATGCAACAGACTCATCAAAGAACTAGCAGCATTCCACAGGCAGTGGATAATCCTTCATGCAGTGGAGGAGCTAGAAAAGTACCGTTTGCACATTGTAATTACCCAGAATTGAAAAATCAACAGTCCAGAACATTAATCTTAAGGTACACTAGAATGGAGAAGCAATGTAATTCTAGTCTCAGCAGGAATTTGGAAAATCACTGGTCTCCGAAGTTGGGAGAGAAAAAGCAAAGCAGGGTTCCATGTGAGGAAGAGATGATACAGCATGTGAGGGACCACACCACTCATTCAGAAGGTTACTGTGAACGTCCACTGCTCAGAAAGGTTCATGCTGGGATCCAGGGTTTTCCCTGTCGTGAAGATGGAGAGAGAAATGTTGCCAAGGAACAAAGCCGGTCGGCTTGCTTAGTAACTTCAGTAGGTTCAGCTCCCTCTCATGGCAAGTTTGGTAGTGTGTTAACCTCTAATGGGGATATGGATATTATAAATGAAAAAAATAGGTTGGCTAAAAGCTTTGGGGATGGGAACCCAAGCAAAATTGAAGATGCAAAAACCGAGATCCAGTCTCTTGTTAAACTGAATCTGAAGTTCTTAACTAGAGATAAACAATTAGCTGTTCGCGATGCAGGTGTCAATACCTTCAAGGCAGTTGCAAGGCAGGCTACCCATACCATCTTAGCTGCTTGCAGTTCGGAGCAGCCCTCAAGCTCGGTATGCAGCCATACTGACCATACTCAGTTTCCGAAATCTACCTTAATGCCTAATTGTTGCCGACAATGCTTTCATGCTTTTGTAAACAATGTTGTCAATTCCATCGTGTTGGAGAAAGTGGGTTGTGCTTAA 1665 0.4222 MERQESMKALVVKGDCRMTKFQRKKTEKKGERERERENDWKKVYHPHGNMTTGPSDSYAEVKCSICHVGTDENLLLLCDLCDTASHTYCAGLGFTIPEGDWFCHDCAISRETYANQESDKQNVVPTAEPSATISDIVRVPSSQVVRRQSASPLQQNQSSPVIPLPDRVSRFKGKKPVSDFQRVQRNVQAFRENWNSLRSGSLRFHSNSVQSGGTNSQKQDSSSSSLGKLDDSHSMASTGLQQSTVQGGPSSNMLNERGLKDIDKAWKMMDRAKTMQQTHQRTSSIPQAVDNPSCSGGARKVPFAHCNYPELKNQQSRTLILRYTRMEKQCNSSLSRNLENHWSPKLGEKKQSRVPCEEEMIQHVRDHTTHSEGYCERPLLRKVHAGIQGFPCREDGERNVAKEQSRSACLVTSVGSAPSHGKFGSVLTSNGDMDIINEKNRLAKSFGDGNPSKIEDAKTEIQSLVKLNLKFLTRDKQLAVRDAGVNTFKAVARQATHTILAACSSEQPSSSVCSHTDHTQFPKSTLMPNCCRQCFHAFVNNVVNSIVLEKVGCA 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2147g00029 554 MobiDBLite consensus disorder prediction 273 291 - -
Gabi2147g00029 554 ProSiteProfiles Zinc finger PHD-type profile. 60 109 IPR019787 -
Gabi2147g00029 554 MobiDBLite consensus disorder prediction 201 256 - -
Gabi2147g00029 554 MobiDBLite consensus disorder prediction 271 293 - -
Gabi2147g00029 554 SUPERFAMILY FYVE/PHD zinc finger 40 108 IPR011011 -
Gabi2147g00029 554 MobiDBLite consensus disorder prediction 21 44 - -
Gabi2147g00029 554 PANTHER F18C1.6 PROTEIN 42 551 - -
Gabi2147g00029 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 131 IPR013083 -
Gabi2147g00029 554 SMART PHD_3 62 107 IPR001965 -
Gabi2147g00029 554 MobiDBLite consensus disorder prediction 144 163 - -
Gabi2147g00029 554 Pfam PHD-finger 63 107 IPR019787 -
Gabi2147g00029 554 MobiDBLite consensus disorder prediction 201 253 - -
Gabi2147g00029 554 MobiDBLite consensus disorder prediction 144 178 - -
Gabi2147g00029 554 MobiDBLite consensus disorder prediction 21 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2147g00029 Gabi-Chr2147 234253 237428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2147g00029 54 110 C2H2 Transcription Factor Family AT3G01460 39.655 4.94e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi2147g00029 PHD 3.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2147g00029 - - gmx:100808541 642.884