Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi2147g00029 | ATGGAGAGGCAAGAGTCGATGAAAGCACTGGTTGTTAAGGGTGATTGTAGAATGACAAAATTCCAGAGAAAAAAGACAGAGAAGAAAGGAGAGAGAGAGAGAGAGAGAGAGAATGATTGGAAGAAGGTTTATCATCCTCATGGAAATATGACAACTGGTCCTTCTGATTCTTATGCTGAAGTCAAATGTAGTATCTGCCATGTTGGGACAGATGAAAATCTTCTTCTACTTTGTGATCTTTGTGATACTGCTTCACATACATATTGCGCTGGTTTGGGCTTTACTATTCCTGAAGGTGATTGGTTTTGTCATGATTGTGCTATTTCCCGGGAGACATATGCTAATCAAGAATCAGACAAACAAAACGTTGTGCCAACAGCTGAGCCAAGTGCGACCATCTCTGATATTGTGAGAGTACCAAGCAGCCAGGTGGTTAGAAGACAAAGTGCATCTCCTTTACAACAAAACCAGTCATCTCCTGTTATTCCTTTACCTGATAGGGTGAGTAGATTCAAAGGTAAAAAACCTGTGTCAGATTTCCAACGTGTGCAGCGTAACGTACAAGCATTTCGTGAAAATTGGAATTCTTTGAGAAGTGGTTCATTACGGTTCCATAGCAATTCAGTTCAATCTGGTGGCACAAATAGTCAAAAACAAGATTCTAGTTCCTCATCACTTGGCAAATTAGATGATTCACATTCTATGGCTTCAACAGGCCTTCAACAATCCACTGTCCAAGGGGGTCCTTCTAGCAATATGTTGAATGAGAGAGGCTTGAAAGATATTGACAAGGCTTGGAAAATGATGGACCGGGCAAAGACAATGCAACAGACTCATCAAAGAACTAGCAGCATTCCACAGGCAGTGGATAATCCTTCATGCAGTGGAGGAGCTAGAAAAGTACCGTTTGCACATTGTAATTACCCAGAATTGAAAAATCAACAGTCCAGAACATTAATCTTAAGGTACACTAGAATGGAGAAGCAATGTAATTCTAGTCTCAGCAGGAATTTGGAAAATCACTGGTCTCCGAAGTTGGGAGAGAAAAAGCAAAGCAGGGTTCCATGTGAGGAAGAGATGATACAGCATGTGAGGGACCACACCACTCATTCAGAAGGTTACTGTGAACGTCCACTGCTCAGAAAGGTTCATGCTGGGATCCAGGGTTTTCCCTGTCGTGAAGATGGAGAGAGAAATGTTGCCAAGGAACAAAGCCGGTCGGCTTGCTTAGTAACTTCAGTAGGTTCAGCTCCCTCTCATGGCAAGTTTGGTAGTGTGTTAACCTCTAATGGGGATATGGATATTATAAATGAAAAAAATAGGTTGGCTAAAAGCTTTGGGGATGGGAACCCAAGCAAAATTGAAGATGCAAAAACCGAGATCCAGTCTCTTGTTAAACTGAATCTGAAGTTCTTAACTAGAGATAAACAATTAGCTGTTCGCGATGCAGGTGTCAATACCTTCAAGGCAGTTGCAAGGCAGGCTACCCATACCATCTTAGCTGCTTGCAGTTCGGAGCAGCCCTCAAGCTCGGTATGCAGCCATACTGACCATACTCAGTTTCCGAAATCTACCTTAATGCCTAATTGTTGCCGACAATGCTTTCATGCTTTTGTAAACAATGTTGTCAATTCCATCGTGTTGGAGAAAGTGGGTTGTGCTTAA | 1665 | 0.4222 | MERQESMKALVVKGDCRMTKFQRKKTEKKGERERERENDWKKVYHPHGNMTTGPSDSYAEVKCSICHVGTDENLLLLCDLCDTASHTYCAGLGFTIPEGDWFCHDCAISRETYANQESDKQNVVPTAEPSATISDIVRVPSSQVVRRQSASPLQQNQSSPVIPLPDRVSRFKGKKPVSDFQRVQRNVQAFRENWNSLRSGSLRFHSNSVQSGGTNSQKQDSSSSSLGKLDDSHSMASTGLQQSTVQGGPSSNMLNERGLKDIDKAWKMMDRAKTMQQTHQRTSSIPQAVDNPSCSGGARKVPFAHCNYPELKNQQSRTLILRYTRMEKQCNSSLSRNLENHWSPKLGEKKQSRVPCEEEMIQHVRDHTTHSEGYCERPLLRKVHAGIQGFPCREDGERNVAKEQSRSACLVTSVGSAPSHGKFGSVLTSNGDMDIINEKNRLAKSFGDGNPSKIEDAKTEIQSLVKLNLKFLTRDKQLAVRDAGVNTFKAVARQATHTILAACSSEQPSSSVCSHTDHTQFPKSTLMPNCCRQCFHAFVNNVVNSIVLEKVGCA | 554 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi2147g00029 | 554 | MobiDBLite | consensus disorder prediction | 273 | 291 | - | - | |
Gabi2147g00029 | 554 | ProSiteProfiles | Zinc finger PHD-type profile. | 60 | 109 | IPR019787 | - | |
Gabi2147g00029 | 554 | MobiDBLite | consensus disorder prediction | 201 | 256 | - | - | |
Gabi2147g00029 | 554 | MobiDBLite | consensus disorder prediction | 271 | 293 | - | - | |
Gabi2147g00029 | 554 | SUPERFAMILY | FYVE/PHD zinc finger | 40 | 108 | IPR011011 | - | |
Gabi2147g00029 | 554 | MobiDBLite | consensus disorder prediction | 21 | 44 | - | - | |
Gabi2147g00029 | 554 | PANTHER | F18C1.6 PROTEIN | 42 | 551 | - | - | |
Gabi2147g00029 | 554 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 49 | 131 | IPR013083 | - | |
Gabi2147g00029 | 554 | SMART | PHD_3 | 62 | 107 | IPR001965 | - | |
Gabi2147g00029 | 554 | MobiDBLite | consensus disorder prediction | 144 | 163 | - | - | |
Gabi2147g00029 | 554 | Pfam | PHD-finger | 63 | 107 | IPR019787 | - | |
Gabi2147g00029 | 554 | MobiDBLite | consensus disorder prediction | 201 | 253 | - | - | |
Gabi2147g00029 | 554 | MobiDBLite | consensus disorder prediction | 144 | 178 | - | - | |
Gabi2147g00029 | 554 | MobiDBLite | consensus disorder prediction | 21 | 48 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi2147g00029 | Gabi-Chr2147 | 234253 | 237428 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi2147g00029 | 54 | 110 | C2H2 Transcription Factor Family | AT3G01460 | 39.655 | 4.94e-09 | 57.4 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Gabi2147g00029 | PHD | 3.1e-08 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi2147g00029 | - | - | gmx:100808541 | 642.884 |