Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2147g00027 ATGTCGAGTTCGTTGGTTTCGCCGAAGAAGCGCGTCAAATCCGAAGTGGATGTGGATGATGATTGTTGCGGGATTTGCTACGCCGAGCGTGGGTTTTCGATCGCGGGGGAAATTGATTGCTGCAACCACTACTTTTGCTTCGTTTGCATCATGGAATGGGCTAAGCACGAGTCTCGGTGCCCAATCTGTCGCCAGAGATTCTCCAACGTTCGCAGGCTCCCTATGCATGGCGTCTTTTCTTCCTCTCGGGACGTTAAGGTTCCTCTTCGTGACCAGGTTTATCATCCTCATGGAAATATGACAACTGGTCCTTCTGATTCTTATGCTGAAGTCAAATGTAGTATCTGCCATGTTGGGACAGATGAAAATCTTCTTCTACTTTGTGATCTTTGTGATACTGCTTCACATACATATTGCGCTGGTTTGGGCTTTACTATTCCTGAAGGTGATTGGTTTTGTCATGATTGTGCTATTTCCCGGGAGACATATGCTAATCAAGAATCAGACAAACAAAACGTTGTGCCAACAGCTGAGCCAAGTGCGACCATCTCTGATATTGTGAGAGTACCAAGCAGCCAGGTGGTTAGAAGACAAAGTGCATCTCCTTTACAACAAAACCAGTCATCTCCTGTTATTCCTTTACCTGATAGGGTGAGTAGATTCAAAGGTAAAAAACCTGTGTCAGATTTCCAACGTGTGCAGCGTAACGTACAAGCATTTCGTGAAAATTGGAATTCTTTGAGAAGTGGTTCATTACGGTTCCATAGCAATTCAGTTCAATCTGGTGGCACAAATAGTCAAAAACAAGATTCTAGTTCCTCATCACTTGGCAAATTAGATGATTCACATTCTATGGCTTCAACAGGCCTTCAACAATCCACTGTCCAAGGGGGTCCTTCTAGCAATATGTTGAATGAGAGAGGCTTGAAAGATATTGACAAGGCTTGGAAAATGATGGACCGGGCAAAGACAATGCAACAGACTCATCAAAGAACTAGCAGCATTCCACAGGCAGTGGATAATCCTTCATGCAGTGGAGGAGCTAGAAAAGTACCGTTTGCACATTGTAATTACCCAGAATTGAAAAATCAACAGTCCAGAACATTAATCTTAAGGTACACTAGAATGGAGAAGCAATGTAATTCTAGTCTCAGCAGGAATTTGGAAAATCACTGGTCTCCGAAGTTGGGAGAGAAAAAGCAAAGCAGGGTTCCATGTGAGGAAGAGATGATACAGCATGTGAGGGACCACACCACTCATTCAGAAGGTTACTGTGAACGTCCACTGCTCAGAAAGGTTCATGCTGGGATCCAGGGTTTTCCCTGTCGTGAAGATGGAGAGAGAAATGTTGCCAAGGAACAAAGCCGGTCGGCTTGCTTAGTAACTTCAGTAGGTTCAGCTCCCTCTCATGGCAAGTTTGGTAGTGTGTTAACCTCTAATGGGGATATGGATATTATAAATGAAAAAAATAGGTTGGCTAAAAGCTTTGGGGATGGGAACCCAAGCAAAATTGAAGATGCAAAAACCGAGATCCAGTCTCTTGTTAAACTGAATCTGAAGTTCTTAACTAGAGATAAACAATTAGCTGTTCGCGATGCAGGTGTCAATACCTTCAAGGCAGTTGCAAGGCAGGCTACCCATACCATCTTAGCTGCTTGCAGTTCGGAGCAGCCCTCAAGCTCGGTATGCAGCCATACTGACCATACTCAGTTTCCGAAATCTACCTTAATGCCTAATTGTTGCCGACAATGCTTTCATGCTTTTGTAAACAATGTTGTCAATTCCATCGTGTTGGAGAAAGTGGGTTGTGCTTAA 1815 0.4386 MSSSLVSPKKRVKSEVDVDDDCCGICYAERGFSIAGEIDCCNHYFCFVCIMEWAKHESRCPICRQRFSNVRRLPMHGVFSSSRDVKVPLRDQVYHPHGNMTTGPSDSYAEVKCSICHVGTDENLLLLCDLCDTASHTYCAGLGFTIPEGDWFCHDCAISRETYANQESDKQNVVPTAEPSATISDIVRVPSSQVVRRQSASPLQQNQSSPVIPLPDRVSRFKGKKPVSDFQRVQRNVQAFRENWNSLRSGSLRFHSNSVQSGGTNSQKQDSSSSSLGKLDDSHSMASTGLQQSTVQGGPSSNMLNERGLKDIDKAWKMMDRAKTMQQTHQRTSSIPQAVDNPSCSGGARKVPFAHCNYPELKNQQSRTLILRYTRMEKQCNSSLSRNLENHWSPKLGEKKQSRVPCEEEMIQHVRDHTTHSEGYCERPLLRKVHAGIQGFPCREDGERNVAKEQSRSACLVTSVGSAPSHGKFGSVLTSNGDMDIINEKNRLAKSFGDGNPSKIEDAKTEIQSLVKLNLKFLTRDKQLAVRDAGVNTFKAVARQATHTILAACSSEQPSSSVCSHTDHTQFPKSTLMPNCCRQCFHAFVNNVVNSIVLEKVGCA 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2147g00027 604 MobiDBLite consensus disorder prediction 194 213 - -
Gabi2147g00027 604 ProSitePatterns Zinc finger RING-type signature. 41 50 IPR017907 -
Gabi2147g00027 604 PANTHER F18C1.6 PROTEIN 14 601 - -
Gabi2147g00027 604 SMART ring_2 23 63 IPR001841 -
Gabi2147g00027 604 MobiDBLite consensus disorder prediction 321 343 - -
Gabi2147g00027 604 SMART PHD_3 112 157 IPR001965 -
Gabi2147g00027 604 Pfam PHD-finger 113 157 IPR019787 -
Gabi2147g00027 604 MobiDBLite consensus disorder prediction 323 341 - -
Gabi2147g00027 604 Pfam Ring finger domain 22 64 IPR001841 -
Gabi2147g00027 604 MobiDBLite consensus disorder prediction 251 303 - -
Gabi2147g00027 604 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 73 IPR013083 -
Gabi2147g00027 604 MobiDBLite consensus disorder prediction 194 228 - -
Gabi2147g00027 604 SUPERFAMILY RING/U-box 12 71 - -
Gabi2147g00027 604 MobiDBLite consensus disorder prediction 251 306 - -
Gabi2147g00027 604 SUPERFAMILY FYVE/PHD zinc finger 104 160 IPR011011 -
Gabi2147g00027 604 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 181 IPR013083 -
Gabi2147g00027 604 ProSiteProfiles Zinc finger PHD-type profile. 110 159 IPR019787 -
Gabi2147g00027 604 ProSiteProfiles Zinc finger RING-type profile. 23 64 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2147g00027 Gabi-Chr2147 232167 237428 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2147g00027 104 160 C2H2 Transcription Factor Family AT3G01460 39.655 1.34e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi2147g00027 PHD 3.5e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2147g00027 - - gmx:100808541 802.742