Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2147g00026 ATGGCAGATGTCACCTACCTCCGCCACCACGACACCGACGACGACCCTCACCCTCACCTTCCCGACCAAACCCTAATTCCCTTACCCTACCGTTCCCCTCACGATTTCGATTTCGATTTCGATTTCGACTTCGACTTCGATTTATACGCTTCCGATCCCGAATTTCCGCCGAACCGTGCTGACCACCACTTCTCCATGATGGAACGCGAAAACCAGGTGAATTTCGTTATGGATCTTTTTCATCAGCGCGTTGAGCAATCTCAGGTAATGGGTCACACCGATCCTGTCTCACAACCCCTAAACGACGCCGCTTCTGGTTTCGGACTTGATTTAGGGTTTGCCGTTGACGACGTTGACGGCGATGATTTCTTCTTTGGGAGGAGGGTTTCCGGATCTGAATCCGGCGAGGCACCCTTTGATAACTGCGTTCGCCTCGTGGGGTTTGGATCGGAATCTGATGAGGAAGAAGGGAATGGGGTTTTCGGGATCTGCTTGCATTCGGATGAAGAGTATAACGAAAACGACGACGTTTCGAGCATCCCTCTCTGTTGGGATTCGCTTCATTTGGACAACAACGAAGATTTTGAGTGGGAAGAAGTTGATGGTCGAGTTGATGAGAGGGATATCTTGAGCATGCTCACTGTTGAGGATGATAGGTCAGTTTCTGTTTCCGTTTCTGCAATAGCTGGAATTGAAGAACAAGAAGGAGAAGAAGAAGAAGAAGAAGGAATGAACGTTGTGAGGGTGGAAGGAGGAGGCATGGATAATAATTTGGAATGGCAAGTGTTGTTGAATGCCAACAATTTGGACACAGTTCATGACTTGGAGCCTTATTTTGGTGAACATGATGATTATATTTACACTGGAGAGTATGAGATGATGTTTGGTCAATTTGCTGAGAGCAATGAGAGTCCCTTAATTGCTACCCTTCCTGCTTCTGCATCCGTTGTTCAGAACCTTCCATCAGTGATTGTGACCAAAGAAGATGTGGATAACAACAATGCACTCTGTGCTGTTTGCAAAGATGACTTTGCTGTTGGGGAAAAAGCAATGAGGTTGCCGTGTTCGCATCGCTACCACCGTGATTGCATTGTGCCTTGGTTGGGCATTCGGAATACCTGCCCTGTCTGTCGTTATGAGTTCCCCACCCATGATGTCAAGTCACATATATTTGATTATTAG 1182 0.4712 MADVTYLRHHDTDDDPHPHLPDQTLIPLPYRSPHDFDFDFDFDFDFDLYASDPEFPPNRADHHFSMMERENQVNFVMDLFHQRVEQSQVMGHTDPVSQPLNDAASGFGLDLGFAVDDVDGDDFFFGRRVSGSESGEAPFDNCVRLVGFGSESDEEEGNGVFGICLHSDEEYNENDDVSSIPLCWDSLHLDNNEDFEWEEVDGRVDERDILSMLTVEDDRSVSVSVSAIAGIEEQEGEEEEEEGMNVVRVEGGGMDNNLEWQVLLNANNLDTVHDLEPYFGEHDDYIYTGEYEMMFGQFAESNESPLIATLPASASVVQNLPSVIVTKEDVDNNNALCAVCKDDFAVGEKAMRLPCSHRYHRDCIVPWLGIRNTCPVCRYEFPTHDVKSHIFDY 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2147g00026 393 MobiDBLite consensus disorder prediction 1 20 - -
Gabi2147g00026 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 384 IPR013083 -
Gabi2147g00026 393 ProSiteProfiles Zinc finger RING-type profile. 337 378 IPR001841 -
Gabi2147g00026 393 SMART ring_2 337 377 IPR001841 -
Gabi2147g00026 393 Pfam Ring finger domain 337 378 IPR001841 -
Gabi2147g00026 393 MobiDBLite consensus disorder prediction 1 23 - -
Gabi2147g00026 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 235 382 - -
Gabi2147g00026 393 SUPERFAMILY RING/U-box 317 384 - -
Gabi2147g00026 393 FunFam E3 ubiquitin-protein ligase RING1-like 297 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2147g00026 Gabi-Chr2147 217821 219332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2147g00026 1 383 C3H Transcription Factor Family AT5G60820 36.486 1.55e-59 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2147g00026 - - pcin:129307991 417.927