Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2147g00018 ATGGCACAAGCTACTGTTTCTGAAATTGAATCGCCTCGACGACGCTCTGGTCTATTGCGAGATCAGGTTCAACTAGTTAAAAGAAAGGACTGTGATCGCTATGAAATTGTTCCAATCCAGGATTCTTTGTCATTTGAGAAAGGATTCTTCATAGTTATTCGGGCATGCCAGTTGTTGGCTCAAAAGAATGATGGGCTTATATTAGTAGGAGTTGCAGGTCCCTCTGGAGCAGGGAAAACTGTTTTCACTGACAAGGTCGTCAATTTTATGCCAAGCTTAGCTGTCATAACAATGGACAATTACAATGATTCTAGCCGAATCATAGATGGCAACTTTGATGACCCTCGGTTGACGGATTATGATACCTTGCTCAAAAATATACAGGGCCTTAAAGCAGGGAAGCCTGTTCAGGTTCCAATATATGATTTCAAGTCCAGTTCTCGCGTAGGTTACAGGACTGTTGAAGTCCCTAGCTCCCGCATTGTAATCATAGAAGGCATCTATGCCTTAAGTGAAAAGTTACGACCTTTGCTTGATCTTCGTGTTTCTGTCACCGGTGGAGTTCATTTTGACCTTGTCAAGCGTGTTTTGCGGGACATTCAACGTGCTGGTCAAGAGCCTGAAGAAATAATACATCAAATCTCTGAAACGGTATATCCTATGTATAAAGCTTTTATTGAGCCAGATCTCCAAACAGCACATATAAAAATTATTAACAAGTTTAATCCATTCTCTGGATTCCAGAATCCCTCCTACATATTGAAGTCAGCAAAATCTGTGACAGTAGATGAAATCAAGGCAGTTATAGCTGCAGAGCATACTGAAACCAAAGAAGAAACATATGACATATATCTTCTACCTCCCGGGGAAGACCCTGAAGCATGTCAATCATATTTGAGGATGAGAAACCGGGATGGAAAGTACAATCTCATGTTTGAGGAATGGGTTACAGATAGTCCATTCATAATATCACCTAGAATTACTTTTGAGGTCAGCGTGCGCCTTCTTGGAGGGCTGATGGCCTTGGGGTACACAATTGCAGCTATCCTGAAAAGAAGCAGCCATGTATTTTATGATGATAAAGTGTCCATAAAAACTGATTGGCTAGAACAACTTAATCGCCTATATGTTCAGGTGCAAGGGAAAGATAGAAACTATGTTAAGTTTGTAGCAGAGAAACTGGGGTTGGATGGTTCATATGTTCCTCGCACTTATATTGAACAAATTCAGCTAGAAAAACTTGTAAATGATGTGATGGCACTGCCAGATGATCTGAAGACAAAACTAAGCATAGATGATGATTTGGTTTCAAGCCCCAAAGAAGCGCTTTCCAGAGCTTCTGCAGATAGGAGAATGAAGTATCTCAATCGTGGTATTTCACACTCGTTTTCAAATCAAAGAGACAAGAGTCTATCTAAGCTGACTAGACTTGCTATAAATAACAGAAGATTCGATGGGAGAGCTCTAGAATCACCTACACCGATTGCTAACCAAGGAGTCATCACTCAACTTTCTGATCAAATTTCCACATTAAATGAAAGAATGGATGAGTTCACCTCCCGTATTGAAGAGCTGAATTCAAAGTTTGCAATCAGAAAAGTTTCAGCCAGTCAACAAAACTTGGCTTTGCAGGCTGAAGCCTGCAATGGCTCAGGTCCCACTTCCCTCTTTGTAACTGGATTGGGCAATGGTTCAATGACTGGATCATTGCTGCCTAATTCTTCATCATCTTCCCAATTGGCTAGAGAGTCTCCCCTGATGGAAGAGGTTTTACTTGTTGCACGAGGACAACGTCAAATCATGCATCAACTAGACACTCTGAGCAATATTTTGCATGAATATTTTGGAGAAAGGTCACGGCTGGAAAGAACAGACCAGACAAACAGAATGCGTGAAGTTGAATCCGTAGCCATACCCCTGGTTCTGTCTTTGGCCATTGGTGCTGTTGGTGTGCTTTTATTTCAGGGTTTGAAATCCCAAAAATAA 1986 0.4124 MAQATVSEIESPRRRSGLLRDQVQLVKRKDCDRYEIVPIQDSLSFEKGFFIVIRACQLLAQKNDGLILVGVAGPSGAGKTVFTDKVVNFMPSLAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLKNIQGLKAGKPVQVPIYDFKSSSRVGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFSGFQNPSYILKSAKSVTVDEIKAVIAAEHTETKEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFYDDKVSIKTDWLEQLNRLYVQVQGKDRNYVKFVAEKLGLDGSYVPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDLVSSPKEALSRASADRRMKYLNRGISHSFSNQRDKSLSKLTRLAINNRRFDGRALESPTPIANQGVITQLSDQISTLNERMDEFTSRIEELNSKFAIRKVSASQQNLALQAEACNGSGPTSLFVTGLGNGSMTGSLLPNSSSSSQLARESPLMEEVLLVARGQRQIMHQLDTLSNILHEYFGERSRLERTDQTNRMREVESVAIPLVLSLAIGAVGVLLFQGLKSQK 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2147g00018 661 SUPERFAMILY CYTH-like phosphatases 261 408 IPR033469 -
Gabi2147g00018 661 CDD UMPK_like 68 240 - -
Gabi2147g00018 661 Pfam Phosphoribulokinase / Uridine kinase family 69 237 IPR006083 GO:0005524|GO:0016301
Gabi2147g00018 661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 237 IPR027417 -
Gabi2147g00018 661 Gene3D - 67 248 IPR027417 -
Gabi2147g00018 661 Gene3D - 255 414 - -
Gabi2147g00018 661 PRINTS Uridine kinase signature 189 199 - -
Gabi2147g00018 661 PRINTS Uridine kinase signature 133 148 - -
Gabi2147g00018 661 PRINTS Uridine kinase signature 66 83 - -
Gabi2147g00018 661 PRINTS Uridine kinase signature 225 238 - -
Gabi2147g00018 661 PANTHER URIDINE KINASE 18 424 - -
Gabi2147g00018 661 Pfam CYTH domain 272 405 IPR023577 -
Gabi2147g00018 661 ProSiteProfiles CYTH domain profile. 249 411 IPR023577 -
Gabi2147g00018 661 Coils Coil 501 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2147g00018 Gabi-Chr2147 119984 153773 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2147g00018 67 323 PRT Gene Family AT5G40870 25.564 1.10e-18 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2147g00018 K00876 - gmx:100803122 1180.62