Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2147g00016 ATGGGTAGCGACAGCGAGGCAGAAAAATCGGCGCATAAAGAGAAGGAGAAGAAGAAGATGCTTGCGCTGGCTCCCATTGCAAAACCCCTTGCAGGGAAGAAGCTTTGCAAGCGAACTTTAAAGCTTGTTCGTAGAGCTGCTGAACACAAATGCTTAAAGAGAGGAGTGAAGGAGGTGGTTAAAAGTATAAGGCGAGGTCATAAAGGATTCTGTGTTATAGCTGGGAACATATCACCCATTGATGTCATCACTCATGTTCCTATCCTGTGTGAAGAGTCTGACATCCCATATGTGTATGTCCCGTCTAAAGAAGACCTTGCAAGTGCAGGAGCAACAAAGAGGCCTACTTGCTGTGTTTTGGTGCTGACCAAGCCTGCAAAGGGTGAAATAGAGAAAGGAGAACAAGAGAAACTGAAGTCTGATTATGATCAAGTTGTATCGGATGTTACTGAGCTTGCAACTACTACGCTTTTTTGA 477 0.4465 MGSDSEAEKSAHKEKEKKKMLALAPIAKPLAGKKLCKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGFCVIAGNISPIDVITHVPILCEESDIPYVYVPSKEDLASAGATKRPTCCVLVLTKPAKGEIEKGEQEKLKSDYDQVVSDVTELATTTLF 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2147g00016 158 PRINTS Ribosomal protein L7A/RS6 family signature 52 66 IPR018492 -
Gabi2147g00016 158 PRINTS Ribosomal protein L7A/RS6 family signature 87 97 IPR018492 -
Gabi2147g00016 158 PRINTS Ribosomal protein L7A/RS6 family signature 97 111 IPR018492 -
Gabi2147g00016 158 PRINTS Ribosomal protein L7A/RS6 family signature 71 84 IPR018492 -
Gabi2147g00016 158 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 9 147 - -
Gabi2147g00016 158 PRINTS High mobility group-like nuclear protein signature 55 65 IPR002415 GO:0003723|GO:0005730
Gabi2147g00016 158 PRINTS High mobility group-like nuclear protein signature 38 53 IPR002415 GO:0003723|GO:0005730
Gabi2147g00016 158 PRINTS High mobility group-like nuclear protein signature 99 111 IPR002415 GO:0003723|GO:0005730
Gabi2147g00016 158 PRINTS High mobility group-like nuclear protein signature 25 38 IPR002415 GO:0003723|GO:0005730
Gabi2147g00016 158 FunFam H/ACA ribonucleoprotein complex subunit NHP2 20 152 - -
Gabi2147g00016 158 SUPERFAMILY L30e-like 18 128 IPR029064 -
Gabi2147g00016 158 Gene3D - 17 152 IPR029064 -
Gabi2147g00016 158 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 40 123 IPR004038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2147g00016 Gabi-Chr2147 116014 117850 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2147g00016 52 124 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 28.767 8.11e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2147g00016 K11129 - gmx:100305515 275.018