Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2147g00009 ATGGCCACGTTGCTATCTTTCTTTTTGATGTTCATCCTAGTCTTGTTGGCGCATCCAAGAACAAGCGCTGGATTCATATGTGAAAGCACATCTTGCGAAATCGGTGGACTTCCTATTCAGTTCCCGTTTTGGTTGAGACAAGCAAATCAAAGTCAACTCTGTGGTTACCCAGGAGGGTTCGAGCTGTCGTGTAGCAACAGCACTAACGGTCAACCGTTGATTACTCTACCAGAAGCCGGAGACTTCGTGGTGAAACTCTTCTCACTAGAGAACCAAAAGATTTGGATTAATGACCCTGAAGAGTGTCTCCCAAGTCGTTTCATGCATAACCATGGGTTGAACCTCGAAGTTTCCCCATTCCGATTGAGCGATTATTATACTATTGTCGATTACTCCTTCCTTAACTGCCCCTCCAATTTAACCTCTTCCTTACTTGTACAGCCCATAAGCTGTTTGAATCTAAGCTCTAACAACAAAAACAACAACAACAACAACCACCACCTTAACTATTCGGTGGTAGCTGTTCTGTCCGATCCTCCTTTTTCAACGCCATGGACCTCATCGTGCGACCTGATTTCCACAGCTTCCATCCCCGTTTCAGACATGGTTTCGTTGTTCTGGGTCGACTATTATTCTGACATTCAATTGGAATGGGACAACCCTAATTGCGGAAGTTGTGAAGCACGTGGAGGACGATGTGGGTTCCTTGGTGATCCTCCTTTTAATGTTGCTTGTTACGATCTTCCCAATCAAAGTCAAGGTCTTTCAAGGAAAGCCAAGTACGGTATAAGTATGGGCCTGGGAATTCCTGGACTTCTAGGTATTATTGGGCTTGCATGTTTTTTCTGCGGTAAGAGGAACAGGGGTGATCAACTGCGGCAAACAAGCACTGAACTTTCTACCCTAATTATGGCACGTCCTTCTGTTGTAGTTATGGGCCTTGATGGGGCAGCTATAGAAAGATATCCTAAAACCCAGCTTGGTGAAAGTGGACGATTGCCCAAGCCCAATGATAACATTTGCTCCATATGTCTGTGTGAATATCAGCCCAAGGAGATGTTAAGGACCATCCCAGAGTGCAATCACTATTTTCATGCCAATTGCATAGATGGGTGGCTCAAGATGAATGCTACCTGCCCGTTATGTCGAAATTTACCGGAGGGTTCCTCTTCATTTTCTCGGTCTTTGCTTTTATCTCCAGCTTCTTAA 1209 0.4483 MATLLSFFLMFILVLLAHPRTSAGFICESTSCEIGGLPIQFPFWLRQANQSQLCGYPGGFELSCSNSTNGQPLITLPEAGDFVVKLFSLENQKIWINDPEECLPSRFMHNHGLNLEVSPFRLSDYYTIVDYSFLNCPSNLTSSLLVQPISCLNLSSNNKNNNNNNHHLNYSVVAVLSDPPFSTPWTSSCDLISTASIPVSDMVSLFWVDYYSDIQLEWDNPNCGSCEARGGRCGFLGDPPFNVACYDLPNQSQGLSRKAKYGISMGLGIPGLLGIIGLACFFCGKRNRGDQLRQTSTELSTLIMARPSVVVMGLDGAAIERYPKTQLGESGRLPKPNDNICSICLCEYQPKEMLRTIPECNHYFHANCIDGWLKMNATCPLCRNLPEGSSSFSRSLLLSPAS 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2147g00009 402 Pfam Ring finger domain 340 383 IPR001841 -
Gabi2147g00009 402 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 386 IPR046948 -
Gabi2147g00009 402 CDD RING-H2_EL5-like 340 383 - -
Gabi2147g00009 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 387 IPR013083 -
Gabi2147g00009 402 SMART ring_2 341 382 IPR001841 -
Gabi2147g00009 402 Pfam Wall-associated receptor kinase galacturonan-binding 27 98 IPR025287 GO:0030247
Gabi2147g00009 402 ProSiteProfiles Zinc finger RING-type profile. 341 383 IPR001841 -
Gabi2147g00009 402 SUPERFAMILY RING/U-box 336 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2147g00009 Gabi-Chr2147 57767 59776 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2147g00009 17 386 C3H Transcription Factor Family AT2G46495 34.127 5.95e-55 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2147g00009 - - lja:Lj4g3v3004070.1 520.005