Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2147g00008 ATGACTTTCTTAGCCCACTTGTGCTTACTCTGTATCTTCCTTTTCCATGTTCAAAACACAAGAGCCAAAGTGATTTGCAATAGCATATCATGTGGCGATATTGATATTCAATTTCCTTTCGGATTGAAAGGATCAAATCAAGATCGTCGCTGCAGCTATTATCCAAATCCCAGTTACCAACTTTCATGCGACAACAATAGCCGGACCATTCTCAACCTTCCATATACAGGGGTCTTAGTCGTGAAAAGCATCGATTACGAGGTTCAAACAATCCAAGTCAACGACCCCGATGGATGCCTTCCAAAACGGTTCTTGAATAATTGGAACCTTTCGGAGTCCCCATTCAGGTTAGACCCTAATTATCAACCTTTTAACCTCACCTTCCTTCGTTGTCCCTCCAACGTCACCGAATCATTTCAATTACCATTATCACCAATTTCTTGCCTTAGCGATCCAAGCAATTCAAACTCCTCATCGGTCATAGTTTCATGGACACGACCTATTGTATCGTCAACCTTGTCTCAACGGTGCCAAGTGATTTCCTCGGCTCTTGTCCCACTCCGATTGATGTATATGCCCATGTGGCCCTACTGGCCCGATCTTAACAGTGATATTGGGTTGCAATGGAACCAACCAAGATGTAGGGAGTGTGCGGTTAGTGGTCAAGTTTGTGGTTTCGCCAACGATAAAACCCTTCAACTTGGATGCTTCTCTGCTCCCTCCACCAAAAAAGGTATTTCAAGAAGTGCCAAATATGGCTTAGCTATTGGAGTTGGAATACCTGGACTCTTGTGTCTAATTGGACTTTCTTGCTTTATCTGCGGTAAGACCAGCGTGTTTATACATCGCCGACGGCGGAACACAGAGCTTCCGGGCACAATTTCCCTAGAACCCATTCCGTTTGCAATGGGGCTTGATGGTGCCACAATTGAAAAGTATCCCAAGACTCTTGTTGGTGAGAGTGGGCGTTTATTGAAGCCCAATGACAATACATGCTCAATATGCTTATCTGAATATGAGCCCAAAGAGACGTTGAGAAGCATACCTGAGTGCAGCCATTATTTTCATGCAGATTGTATAGATGAGTGGCTCAAAATGAATGGCACATGCCCCTTATGCAGGAATTCACCGGATACATCTTCCACGGTTACCTCTTCCTTTTCTTCCTTAAATCCCACTTCGCCATTGTCCTCTTCACCATAG 1203 0.4431 MTFLAHLCLLCIFLFHVQNTRAKVICNSISCGDIDIQFPFGLKGSNQDRRCSYYPNPSYQLSCDNNSRTILNLPYTGVLVVKSIDYEVQTIQVNDPDGCLPKRFLNNWNLSESPFRLDPNYQPFNLTFLRCPSNVTESFQLPLSPISCLSDPSNSNSSSVIVSWTRPIVSSTLSQRCQVISSALVPLRLMYMPMWPYWPDLNSDIGLQWNQPRCRECAVSGQVCGFANDKTLQLGCFSAPSTKKGISRSAKYGLAIGVGIPGLLCLIGLSCFICGKTSVFIHRRRRNTELPGTISLEPIPFAMGLDGATIEKYPKTLVGESGRLLKPNDNTCSICLSEYEPKETLRSIPECSHYFHADCIDEWLKMNGTCPLCRNSPDTSSTVTSSFSSLNPTSPLSSSP 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2147g00008 400 Pfam Wall-associated receptor kinase galacturonan-binding 26 95 IPR025287 GO:0030247
Gabi2147g00008 400 ProSiteProfiles Zinc finger RING-type profile. 332 374 IPR001841 -
Gabi2147g00008 400 MobiDBLite consensus disorder prediction 381 400 - -
Gabi2147g00008 400 CDD RING-H2_EL5-like 332 374 - -
Gabi2147g00008 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 379 IPR013083 -
Gabi2147g00008 400 SUPERFAMILY RING/U-box 324 377 - -
Gabi2147g00008 400 SMART ring_2 332 373 IPR001841 -
Gabi2147g00008 400 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 377 IPR046948 -
Gabi2147g00008 400 Pfam Ring finger domain 330 374 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2147g00008 Gabi-Chr2147 52946 56006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2147g00008 26 377 C3H Transcription Factor Family AT2G46495 34.454 2.27e-53 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2147g00008 - - gmx:100810240 516.924