Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2145g00008 ATGAGTTCACCACACTTCAAAAATGGTGGTTATGGTTTCTGTGGGGAAATGAATATTTCCCCTTCAACTCATGTTCCTTCTTCTTCTTCTTCTTCTCATCTCCAACCTTCTCTGCCTAATCCTTTTGGAATGATGGGTCATGCTGGGGACACAGAATCTGAGAGGTGTGATAAAGCCTTTCAGATTTTGAGCCCCTCAGTGTTCCATCCCCAAGAGAACCCCATAACAAGGAGAACCATTGATGAAGGGGATGATGGGAATTTTGGGGTTGAAAGCAAAAGCTTGTCTTTGAAACTTGGTGAGGAAGTTGAAGCTAAGAGTTCTTCAGCCACAGGGAAAATCGGGTACACTAAGCTTTGTGTTAGAGGTCATTGGAGGCCAGCTGAAGATGCCAAACTTAAAGAGCTTGTTGCTGAATTCGGTCCTCAAAACTGGAATTCCATCGCTGAGCATCTTAAAGGAAGATCAGGAAAAAGTTGCAGACTGAGGTGGTTTAATCAGCTGGATCCTAGAATTAACAAAATGCCTTTCAGTGAGGAAGAAGAGGAGAGGCTCTTAACTGCTCATAAAATGTATGGCAACAAATGGGCTATGATTTCTAAATTCTTTCCTGGTAGAACAGACAATGCAGTCAAGAACCATTGGCATGTGATCATGTCTAGGAGGCAAAGGGAGGAATCAAGTGTCTATAGAAGGAGAAAACCCACATTTCAAAGTTTTCCAAATGGTTTAAATTTGACTTTATCAAACAATGTAGCTAGTGAATCAACCATGTCAAGCCCCATTGATGAATCTGCTTCAACCTGCACTACTAACCTCTCCCTCACCACCTCTTCAGCCAATCCAATTCCTAGACCTTTTCATAACATGAATCCTGTTCAGAATTACCAAGCCTTTGGATCACTAATGAGTTTATATGGAGAAAGCAGGGTACCAACCAAGGATGTGGGTTTTGACAATATTTTTAGTGCTTGGAACGGTTCACATGTGCGTGGATCCATGGTAAAACTCATGGGTGTGGACCAATCCAATTATTCAGATTCAAACTCTGAAGTTTCAGTATCTGAGTCAGTTGCTAACAAGAAGATCAATCTCTCTATTTCTGGGGAAAGTGCAAATGGTGGTGATAAAATTAACATGCCATTCATTGACTTTCTTGGGGTTGGAGCTACATAG 1176 0.4158 MSSPHFKNGGYGFCGEMNISPSTHVPSSSSSSHLQPSLPNPFGMMGHAGDTESERCDKAFQILSPSVFHPQENPITRRTIDEGDDGNFGVESKSLSLKLGEEVEAKSSSATGKIGYTKLCVRGHWRPAEDAKLKELVAEFGPQNWNSIAEHLKGRSGKSCRLRWFNQLDPRINKMPFSEEEEERLLTAHKMYGNKWAMISKFFPGRTDNAVKNHWHVIMSRRQREESSVYRRRKPTFQSFPNGLNLTLSNNVASESTMSSPIDESASTCTTNLSLTTSSANPIPRPFHNMNPVQNYQAFGSLMSLYGESRVPTKDVGFDNIFSAWNGSHVRGSMVKLMGVDQSNYSDSNSEVSVSESVANKKINLSISGESANGGDKINMPFIDFLGVGAT 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2145g00008 391 ProSiteProfiles Myb-like domain profile. 169 219 IPR001005 -
Gabi2145g00008 391 Gene3D - 175 235 - -
Gabi2145g00008 391 FunFam MYB transcription factor 122 173 - -
Gabi2145g00008 391 MobiDBLite consensus disorder prediction 22 53 - -
Gabi2145g00008 391 SMART sant 121 170 IPR001005 -
Gabi2145g00008 391 SMART sant 173 221 IPR001005 -
Gabi2145g00008 391 MobiDBLite consensus disorder prediction 22 38 - -
Gabi2145g00008 391 Gene3D - 121 173 - -
Gabi2145g00008 391 SUPERFAMILY Homeodomain-like 121 215 IPR009057 -
Gabi2145g00008 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 169 223 IPR017930 -
Gabi2145g00008 391 Pfam Myb-like DNA-binding domain 125 185 - -
Gabi2145g00008 391 PANTHER MYB PROTEIN-RELATED 122 269 - -
Gabi2145g00008 391 ProSiteProfiles Myb-like domain profile. 122 168 IPR001005 -
Gabi2145g00008 391 CDD SANT 125 166 IPR001005 -
Gabi2145g00008 391 CDD SANT 176 216 IPR001005 -
Gabi2145g00008 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 168 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2145g00008 Gabi-Chr2145 285194 286694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2145g00008 106 287 MYB Transcription Factor Family AT5G17800 58.730 2.02e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2145g00008 Myb_DNA-bind_6 2.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2145g00008 K09422 - qsa:O6P43_009928 390.963