Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2129g00004 ATGGGAGCGACCAAGCACGACCAATGGCAGTGGGAGAACGCCACCGCCGGCGCCGCCGCAGGATTCGCCACCGTCGCCGTTGTGCATCCCCTCGACGTTGTCAGAACTAGGTTCCAAGTTAACGATGGTCGAGTCTCTCATCTTCCCAGTTATAAGAACACTGCTCACGCCGTTTTCACCATTGCTCGCTTGGAGGGGTTAAGAGGGTTATATGCAGGCTTTCTTCCTGGGGTTCTTGGGTCAACTATTTCATGGGGTTTATATTTCTTTTTCTATGACAAAGCCAAACAAAGATATGCTAGGAACAGGGAGGAGAAGTTGAACGCAGGTCTTCATCTTGCCTCGGCTGCTGAAGCAGGTGCTTTGGTTTGCTTGTGCACCAATCCTGTTTGGCTAGTAAAAACAAGATTGCAGCTTCAGACTCCTCTTCATCAGACACGGCCATACGCTGGGCTTTACGATGCATTTAGGACCATAATGAGGGAAGAAGGATTTAGTGCACTTTACAGAGGGATAGTTCCTGGTCTATTTCTGGTATCTCATGGTGCTATTCAGTTCACAGCATATGAGGAGCTTCGTAAATTTATTGTCGATTTGAAGAGTAAGGGATGTAAAATACACCATCAAAACCCTGATAAATTGTTGAATTCGGTTGATTATGCCGTTCTTGGAGCAACATCAAAAATTGCTGCAATACTTCTAACTTATCCATTTCAGGTTATACGGGCTCGATTGCAGCAACGACCTAGTGGTGATGGGGTTCCGAGATATATGGACAGTTGGCATGTTGTGAAAGAAACTGCACGATTTGAAGGTGTCCGAGGTTTTTACAAGGGAATTACCCCAAACCTTTTGAAAAATGCTCCTGCTTCTTCAATAACTTTTATTGTTTATGAAAATGTTCTAAAATTTCTTAAAGTGGCTCGAAGGAATGACTAA 939 0.4462 MGATKHDQWQWENATAGAAAGFATVAVVHPLDVVRTRFQVNDGRVSHLPSYKNTAHAVFTIARLEGLRGLYAGFLPGVLGSTISWGLYFFFYDKAKQRYARNREEKLNAGLHLASAAEAGALVCLCTNPVWLVKTRLQLQTPLHQTRPYAGLYDAFRTIMREEGFSALYRGIVPGLFLVSHGAIQFTAYEELRKFIVDLKSKGCKIHHQNPDKLLNSVDYAVLGATSKIAAILLTYPFQVIRARLQQRPSGDGVPRYMDSWHVVKETARFEGVRGFYKGITPNLLKNAPASSITFIVYENVLKFLKVARRND 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2129g00004 312 SUPERFAMILY Mitochondrial carrier 11 300 IPR023395 -
Gabi2129g00004 312 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 10 307 IPR044712 GO:0006862|GO:0055085
Gabi2129g00004 312 FunFam Folate transporter 1, chloroplastic 104 310 - -
Gabi2129g00004 312 PRINTS Mitochondrial carrier protein signature 23 41 IPR002067 GO:0055085
Gabi2129g00004 312 PRINTS Mitochondrial carrier protein signature 71 89 IPR002067 GO:0055085
Gabi2129g00004 312 ProSiteProfiles Solute carrier (Solcar) repeat profile. 107 195 IPR018108 -
Gabi2129g00004 312 Gene3D Mitochondrial carrier domain 98 311 IPR023395 -
Gabi2129g00004 312 ProSiteProfiles Solute carrier (Solcar) repeat profile. 215 304 IPR018108 -
Gabi2129g00004 312 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 98 IPR018108 -
Gabi2129g00004 312 FunFam folate transporter 1, chloroplastic isoform X1 1 103 - -
Gabi2129g00004 312 Pfam Mitochondrial carrier protein 108 197 IPR018108 -
Gabi2129g00004 312 Pfam Mitochondrial carrier protein 218 306 IPR018108 -
Gabi2129g00004 312 Pfam Mitochondrial carrier protein 9 102 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2129g00004 Gabi-Chr2129 9655 19820 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2129g00004 28 305 Chloroplast and Mitochondria Gene Families AT2G47490 39.649 6.86e-50 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2129g00004 K15115 - gmx:100809599 559.296